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Commits on Apr 3, 2019

• Manifest: skip dpkg and custom manifest creation since no longer used in bcbio installs and causing py2/py3 problems

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Commits on Mar 20, 2019

• manifest: include programs installed in environments

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  chapmanb

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Commits on Feb 17, 2019

• Python 3: fix decoding for problem manifest builds

  chapmanb

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Commits on Feb 6, 2019

• Improve linking of environmental executables; python 3 support

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  chapmanb

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Commits on Feb 2, 2019

• Tools install without fabric for bcbio

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  chapmanb

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Commits on Feb 15, 2018

• Manifest: skip brew package info

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  chapmanb

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Commits on Jul 15, 2017

• Avoid errors with broken brew installs

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Commits on Nov 1, 2015

• Ensure local conda packages found for manifest generation when symlinks present

  chapmanb

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• Brew and conda fixes for bcbio install

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  chapmanb

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Commits on Jun 24, 2015

• Manifest: avoid errors with partial outputs from debian package queries. Fixes bcbio/bcbio-nextgen#900

  chapmanb

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Commits on Sep 24, 2014

• Avoid using yolk for manifest creation if not installed. Thanks to @etal

  chapmanb

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Commits on Jul 30, 2014

• Update homebrew manifest to avoid using deprecated 'brew which' command. Ensure cmake gets updated as dependency to other tools

  chapmanb

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Commits on Jul 7, 2014

• Remove GATK lite installation due to broken ftp and version getting dated. Fixes bcbio/bcbio-nextgen-vm#9

  chapmanb

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Commits on Mar 6, 2014

• Cleanly skip creation of R package version manifest if Rscript not found

  chapmanb

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Commits on Mar 5, 2014

• Ensure R version information matches expected output for preparing manifest. Fixes bcbio/bcbio-nextgen#331. Update bcbio.variation to latest version that handles bgzipped inputs

  chapmanb

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Commits on Feb 4, 2014

• Handle identification of GATK version from install directory: works with protected and lite versions

  chapmanb

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Commits on Feb 1, 2014

• Updates to manifest creation: add homebrew installed packages, handle python when yolk not installed, sort debian base packages into separate manifest, skip dpkg when not on debian system

  chapmanb

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• Move manifest creation into importable module for use in bcbio-nextgen

  chapmanb

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