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Update README.md
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tomasbruna authored Jan 20, 2023
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Expand Up @@ -9,4 +9,4 @@ All files are automatically downloaded from OrthoDB and parsed using a [Snakemak
The resulting protein sets are saved into two different folders:

* `clades` contains clade-specific (e.g., `Arthropoda.fa` or `Viridiplantae.fa`) OrthoDB sets.
* `species` contains species-specific protein sets from which the proteins of the same species or proteins of all species in the same taxonomic order were removed. This is intended for gene prediction experiments as described in, e.g, [BRAKER2 paper](https://academic.oup.com/nargab/article/3/1/lqaa108/6066535).
* `species` contains species-specific protein sets from which the proteins of the same species or proteins of all species in the same taxonomic order were removed. This is intended for gene prediction experiments, see, e.g., the [BRAKER2 paper](https://academic.oup.com/nargab/article/3/1/lqaa108/6066535).

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