Skip to content

Commit

Permalink
Update bsoid_gmm.md
Browse files Browse the repository at this point in the history
  • Loading branch information
runninghsus authored Jul 19, 2019
1 parent 3af3b4e commit 5c2961b
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions docs/bsoid_gmm.md
Original file line number Diff line number Diff line change
Expand Up @@ -9,7 +9,7 @@ function [f_10fps,tsne_feats,grp,llh,bsoid_fig] = bsoid_gmm(data,fps,comp,smth_h

*Run [dlc_preprocess.md](dlc_preprocess.md). first*

#### Inputs to BSOID_US.m
#### Inputs to BSOID_GMM.m

- `DATA` 6-body parts (x,y) matrix outlining the mouse viewed from bottom-up. Rows represents frame numbers. Columns 1 & 2: Snout; Columns 3, 4, 5 & 6: two front paws (Left-Right order does not matter); Columns 7, 8, 9 & 10: two hind paws (Left-Right order does not matter); Columns 11 & 12: base of tail (Place it where the tail extends out from the butt).

Expand Down Expand Up @@ -37,7 +37,7 @@ function [f_10fps,tsne_feats,grp,llh,bsoid_fig] = bsoid_gmm(data,fps,comp,smth_h

- `IT` The number of random initialization for Gaussian Mixture Models. This attempts to find global optimum, instead of local optimum. Default is 20.

#### Outputs of BSOID_US.m
#### Outputs of BSOID_GMM.m

- `F_10FPS` Compiled features that were used to cluster, 10fps temporal resolution.
- `TSNE_FEATS` An N x 3 matrix that represents action space. Based on the 7 informative features collected, we utilized a type of dimensionality reduction algorithm: **t-Distributed Stochastic Neighbor Embedding, or t-SNE**, of which emphasizes on preservation of local distances.
Expand Down

0 comments on commit 5c2961b

Please sign in to comment.