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  • MultiplexedSubspaces Public

    Code associated with Multiplexed Subspaces Route Neural Activity Across Brain-wide Networks. Contact [email protected] with any questions.

    MATLAB GNU General Public License v3.0 Updated May 9, 2024

  • fpCNMF Public

    Flexible Penalized Convolutional Non-negative Matrix Factorization (fpCNMF) for large-scale neural imaging data

    MATLAB 4 GNU General Public License v3.0 Updated Nov 22, 2022

  • GenUtils Public

    A collection of general utilities to be used with other repos. Still being updated

    MATLAB Updated Jan 5, 2022

  • Widefield_Imaging_Control Public

    MATLAB Updated Oct 14, 2021

  • SimpleMouseTracker Public

    Simple gui to allow a user to track a mouse (or dark object) in an image. Designed for three chamber social assay but reasonably flexible to any environment that is lighter than the mouse.

    MATLAB Updated Apr 21, 2021

  • CortexWideLowDimensionalSpatiotemporalDynamics Public

    Example Data and Figure Generation Code

    MATLAB MIT License Updated Jun 9, 2020

  • DeepLabCut Public

    Forked from DeepLabCut/DeepLabCut

    Markerless pose estimation of user-defined features with deep learning for all animals, including humans

    Python GNU Lesser General Public License v3.0 Updated Nov 22, 2019

  • umap Public

    Forked from lmcinnes/umap

    Uniform Manifold Approximation and Projection

    Python BSD 3-Clause "New" or "Revised" License Updated Nov 12, 2019

  • MotionMapper Public

    Forked from MMathisLab/MotionMapper

    Sample implementation of the MotionMapper behavioral analysis algorithms

    MATLAB Updated Nov 11, 2019

  • B-SOID Public

    Forked from YttriLab/B-SOID

    Behavioral segmentation of open field in DeepLabCut, or B-SOID ("B-side"), is an unsupervised learning algorithm written in MATLAB that serves to discover behaviors that are not pre-defined by users.

    MATLAB GNU General Public License v3.0 Updated Oct 30, 2019

  • umap-matlab-wrapper Public

    Forked from sg-s/umap-matlab-wrapper

    A simple MATLAB wrapper for umap

    MATLAB Updated Jul 18, 2019

  • gramm Public

    Forked from piermorel/gramm

    Gramm is a complete data visualization toolbox for Matlab. It provides an easy to use and high-level interface to produce publication-quality plots of complex data with varied statistical visualiza…

    MATLAB MIT License Updated Nov 18, 2018