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colindaven authored Mar 21, 2021
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Demultiplex reads in FASTQ format from a FASTQ input file according to an oligo in the first x bases (eg Unique Molecular Identifier, UMI).

- accept oligo eg 8bp as first command line arg, see examples below
- read FASTQ
- match given oligo exactly to first 8bp of the read
- write all reads - unmodified, i.e. still containing oligo - to standard out

See examples below.

Install - please first install Rust and Cargo from their website

Usage:
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