Reformat

cornett · Jun 30, 2019 · 0117d61 · 0117d61
1 parent 535b6a7
commit 0117d61
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Showing 5 changed files with 1,753 additions and 1,855 deletions.
diff --git a/afl/smiles/smiles.c b/afl/smiles/smiles.c
@@ -1,10 +1,7 @@
 #include <stdio.h>
-
 #include "coho.h"
 
-
-int
-main(void)
+int main(void)
 {
 	struct coho_smiles smi;
 	char *line = NULL;

diff --git a/coho.h b/coho.h
@@ -15,97 +15,97 @@
  */
 
 enum coho_status {
-    COHO_OK,
-    COHO_ERROR,
-    COHO_NOMEM,
+	COHO_OK,
+	COHO_ERROR,
+	COHO_NOMEM,
 };
 
 /* Compatibility functions {{{
 */
 
 #undef strlcpy
-size_t   strlcpy(char *, const char *, size_t);
+size_t strlcpy(char *, const char *, size_t);
 
 #undef reallocarray
-void    *reallocarray(void *, size_t, size_t);
+void *reallocarray(void *, size_t, size_t);
 
 /* }}} */
 
 /* SMILES parsing {{{
 */
 enum {
-    COHO_SMILES_BOND_UNSPECIFIED    = 0,
-    COHO_SMILES_BOND_SINGLE         = 1,
-    COHO_SMILES_BOND_DOUBLE         = 2,
-    COHO_SMILES_BOND_TRIPLE         = 3,
-    COHO_SMILES_BOND_QUAD           = 4,
-    COHO_SMILES_BOND_AROMATIC       = 5,
+	COHO_SMILES_BOND_UNSPECIFIED = 0,
+	COHO_SMILES_BOND_SINGLE = 1,
+	COHO_SMILES_BOND_DOUBLE = 2,
+	COHO_SMILES_BOND_TRIPLE = 3,
+	COHO_SMILES_BOND_QUAD = 4,
+	COHO_SMILES_BOND_AROMATIC = 5,
 };
 
 enum {
-    COHO_SMILES_BOND_STEREO_UNSPECIFIED,
-    COHO_SMILES_BOND_STEREO_UP,
-    COHO_SMILES_BOND_STEREO_DOWN,
+	COHO_SMILES_BOND_STEREO_UNSPECIFIED,
+	COHO_SMILES_BOND_STEREO_UP,
+	COHO_SMILES_BOND_STEREO_DOWN,
 };
 
 struct coho_smiles_atom {
-    int                              atomic_number;
-    char                             symbol[4];
-    int                              isotope;
-    int                              charge;
-    int                              hydrogen_count;
-    int                              implicit_hydrogen_count;
-    int                              is_bracket;
-    int                              is_organic;
-    int                              is_aromatic;
-    char                             chirality[8];
-    int                              atom_class;
-    int                              position;
-    int                              length;
+	int atomic_number;
+	char symbol[4];
+	int isotope;
+	int charge;
+	int hydrogen_count;
+	int implicit_hydrogen_count;
+	int is_bracket;
+	int is_organic;
+	int is_aromatic;
+	char chirality[8];
+	int atom_class;
+	int position;
+	int length;
 };
 
 struct coho_smiles_bond {
-    int                              atom0;
-    int                              atom1;
-    int                              order;
-    int                              stereo;
-    int                              is_implicit;
-    int                              is_ring;
-    int                              position;
-    int                              length;
+	int atom0;
+	int atom1;
+	int order;
+	int stereo;
+	int is_implicit;
+	int is_ring;
+	int position;
+	int length;
 };
 
 struct coho_smiles_paren {
-    int                              position;
-    struct coho_smiles_bond          bond;
+	int position;
+	struct coho_smiles_bond bond;
 };
 
 struct coho_smiles {
-    const char                      *smiles;
-    int                              position;
-    int                              end;
-    char                             error[32];
-    int                              error_position;
+	const char *smiles;
+	int position;
+	int end;
+	char error[32];
+	int error_position;
 
-    int                              atom_count;
-    int                              bond_count;
+	int atom_count;
+	int bond_count;
 
-    struct coho_smiles_atom         *atoms;
-    size_t                           atoms_capacity;
+	struct coho_smiles_atom *atoms;
+	size_t atoms_capacity;
 
-    struct coho_smiles_bond         *bonds;
-    size_t                           bonds_capacity;
+	struct coho_smiles_bond *bonds;
+	size_t bonds_capacity;
 
-    struct coho_smiles_bond          ring_bonds[100];
-    size_t                           open_ring_closures;
+	struct coho_smiles_bond ring_bonds[100];
+	size_t open_ring_closures;
 
-    struct coho_smiles_paren        *paren_stack;
-    int                              paren_stack_count;
-    size_t                           paren_stack_capacity;
+	struct coho_smiles_paren *paren_stack;
+	int paren_stack_count;
+	size_t paren_stack_capacity;
 };
 
-void    coho_smiles_free(struct coho_smiles *);
-void    coho_smiles_init(struct coho_smiles *);
-int     coho_smiles_parse(struct coho_smiles *, const char *, size_t);
+void coho_smiles_free(struct coho_smiles *);
+void coho_smiles_init(struct coho_smiles *);
+int coho_smiles_parse(struct coho_smiles *, const char *, size_t);
 
 /* }}} */
diff --git a/python/coho/smiles.pxd b/python/coho/smiles.pxd
@@ -26,37 +26,37 @@ cdef extern from "coho.h":
         COHO_SMILES_BOND_STEREO_DOWN
 
     struct coho_smiles_atom:
-        int                 atomic_number
-        char                symbol[4]
-        int                 isotope
-        int                 charge
-        int                 hydrogen_count
-        int                 implicit_hydrogen_count
-        int                 is_bracket
-        int                 is_organic
-        int                 is_aromatic
-        char                chirality[8]
-        int                 atom_class
-        int                 position
-        int                 length
+        int atomic_number
+        char symbol[4]
+        int isotope
+        int charge
+        int hydrogen_count
+        int implicit_hydrogen_count
+        int is_bracket
+        int is_organic
+        int is_aromatic
+        char chirality[8]
+        int atom_class
+        int position
+        int length
 
     struct coho_smiles_bond:
-        int                 atom0
-        int                 atom1
-        int                 order
-        int                 is_implicit
-        int                 is_ring
-        int                 stereo
-        int                 position
-        int                 length
+        int atom0
+        int atom1
+        int order
+        int is_implicit
+        int is_ring
+        int stereo
+        int position
+        int length
 
     struct coho_smiles:
-        int                 atom_count
-        int                 bond_count
-        coho_smiles_atom   *atoms
-        coho_smiles_bond   *bonds
-        char                error[32]
-        int                 error_position
+        int atom_count
+        int bond_count
+        coho_smiles_atom *atoms
+        coho_smiles_bond *bonds
+        char error[32]
+        int error_position
 
     void coho_smiles_free(coho_smiles *)
     int coho_smiles_init(coho_smiles *)