Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

Remove human reads from a sequencing run

Cookiecutter profile for making a NextFlow-based bioinformatics tool

A client software for dataset request and download from openBIS

The primary objective of this GitHub page is to serve as a centralized repository for existing (meta)data standards.

Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data

The NFDI4Microbiota Knowledge Base

Schema and generated objects for biolink data model and upper ontology

A Collaborative list of things to know before submitting to CRAN

The R for Mass Spectrometry meta-package

A taxonomic toolbelt for R

Example Shiny app containing a targets pipeline.

Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights

Introduction to the Command Line for Genomics

A cookiecutter for linkml projects. An equivalent of `linkml-ws new project-name`.

A standardized browser-based spreadsheet editor and validator that can be run offline and locally, and which includes templates for SARS-CoV-2 and Monkeypox sampling data. This project, created by …

A shiny extension for server side file access

A python application for MALDI-TOF MS dereplication

MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs

ConsortM: MALDI-based consortia monitoring

Repository of the integrated mouse gut metagenomic catalog