Calculate NEPC risk score from bulk transcriptome data or single-cell RNA-seq for prostate cancer

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神经科学原理

Challenge inputs, details, and results for the SAMPL6 series of challenges

Anaconda issue tracking

Louvain Community Detection

A BLAST-like toolkit for large-scale scRNA-seq data querying and annotation.

Publication Page for Satpathy*, Granja* et al 2019

Code used in the paper "Time Series Clustering via Community Detection in Networks"

A repo of my experience of preparing GRE test in 30 days.

美国大学备考资料 How to apply US colleges

net_connect: 校园网络自动重连

represent each cell in UMAP plots as a pie chart

Draw phylogenetic trees of tumor evolution

Useful functions to make your scRNA-seq plot more cool!

An implement R package to visualize GSEA results

An annotation package for ggplot plot

Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for manuscript https://doi.org/10.1016/j.cell.2017.09.028 See also …

TCR and BCR assembly from RNA-seq data

A method for calculating single cell entropy and reconstructing cell differentiation lineage using single-cell RNA-seq data

SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.

Repository for the HiRID ICU Benchmark (HiB) project

RNA Velocity generalized through dynamical modeling

Data processing and analysis related code associated with the study "A single-cell and spatially resolved atlas of human breast cancers".

Molecular classification of hepatocellular carcinoma samples