📝 A nicely formatted LaTeX preprint template

Code for analysis from "Exploring functional protein covariation across single cells using nPOP"

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

Makefile for R packages

Bioconductor data science introduction

Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor

SCeptre is a python package that extends the functionalities of Scanpy to analyze multiplexed single-cell proteomics data.

Core Utils for Mass Spectrometry Data

Bioconductor package for management of multi-assay data

Single Cell multimodal data scripts for downloading datasets

Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data

Brings SingleCellExperiment objects to the tidyverse

An R package to query EBI's Ontology Lookup Service (OLS)

Stickers for some Bioconductor packages - feel free to contribute and/or modify.

A demo shiny app inside a package

Topics In Data Science and Bioinformatics

Code for evaluation of differential expression methods in single-cell RNA-seq data

COVID-19 Biohackathon April 5-11 2020

Data analysis and simulations for the ZINB-WaVE paper

Parallel version of blogdown forked from rstudio/blogdown

Ten Years Reproducibility Challenge

This is the git repository matching the Bioconductor package mzR: parser for netCDF, mzXML, mzData and mzML files (mass spectrometry data)

Methods for detecting doublets in single-cell sequencing data

Organize your project into a research website

countsimQC - Compare characteristic features of count data sets