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removed dates from sub versions for stable hyperlink targets
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falexwolf committed Dec 30, 2019
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45 changes: 27 additions & 18 deletions docs/release-notes.rst
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.. include:: _key_contributors.rst


Version 1.4 :small:`2019-12`
----------------------------
Version 1.4
-----------

1.4.5 :small:`2019-12-30`
~~~~~~~~~~~~~~~~~~~~~~~~~
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- fix return sections of docs :smaller:`P Angerer`


Version 1.3 :small:`2019-02`
----------------------------
Version 1.3
-----------

1.3.8 :small:`2019-02-05`
~~~~~~~~~~~~~~~~~~~~~~~~~
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- :func:`~scanpy.external.pp.dca` for imputation and latent space construction using an autoencoder [Eraslan18]_ :pr:`186` :smaller:`G Eraslan`


Version 1.2 :small:`2018-06`
----------------------------
Version 1.2
-----------

1.2.1 :small:`2018-06-08`
~~~~~~~~~~~~~~~~~~~~~~~~~
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- :func:`~scanpy.tl.paga` improved, see PAGA_; the default model changed, restore the previous default model by passing `model='v1.0'`


Version 1.1 :small:`2018-05`
----------------------------
Version 1.1
-----------

1.1.0 :small:`2018-06-01`
~~~~~~~~~~~~~~~~~~~~~~~~~

- :func:`~scanpy.set_figure_params` by default passes `vector_friendly=True` and allows you to produce reasonablly sized pdfs by rasterizing large scatter plots
- :func:`~scanpy.tl.draw_graph` defaults to the ForceAtlas2 layout [Jacomy14]_ [Chippada18]_, which is often more visually appealing and whose computation is much faster :smaller:`S Wollock`
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- :func:`~scanpy.external.tl.sandbag`, :func:`~scanpy.external.tl.cyclone` for scoring genes [Scialdone15]_ [Fechtner18]_


Version 1.0 :small:`2018-03`
----------------------------
Version 1.0
-----------

1.0.0 :small:`2018-03-30`
~~~~~~~~~~~~~~~~~~~~~~~~~

.. rubric:: Major updates

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- `'X_diffmap'` contains the zero component, plotting remains unchanged


Version 0.4 :small:`2018-02`
----------------------------
Version 0.4
-----------

0.4.4 :small:`2018-02-26`
~~~~~~~~~~~~~~~~~~~~~~~~~
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.. _spring tutorial: https://github.com/theislab/scanpy_usage/tree/master/171111_SPRING_export


Version 0.3 :small:`2017-11`
----------------------------
Version 0.3
-----------

0.3.2 :small:`2017-11-29`
~~~~~~~~~~~~~~~~~~~~~~~~~
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.. _anndata: https://pypi.org/project/anndata/


Version 0.2 :small:`2017-10`
-------------------------------
Version 0.2
-----------

0.2.9 :small:`2017-10-25`
~~~~~~~~~~~~~~~~~~~~~~~~~
Expand All @@ -347,8 +353,11 @@ than one million cells
<https://github.com/theislab/scanpy_usage/tree/master/170522_visualizing_one_million_cells>`__.


Version 0.1 :small:`2017-05`
-----------------------------
Version 0.1
-----------

0.1.0 :small:`2017-05-17`
~~~~~~~~~~~~~~~~~~~~~~~~~

Scanpy computationally outperforms and allows reproducing both the `Cell Ranger
R kit's <https://github.com/theislab/scanpy_usage/tree/master/170503_zheng17>`__
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