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0.14.0 Release #200

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merged 23 commits into from
Dec 22, 2023
Merged

0.14.0 Release #200

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0c9b16f
try getting just stage name, but fall back to str representation of s…
vreuter Sep 5, 2023
0b430c7
version 0.13.3a1 for pipestat 0.6.0a1
donaldcampbelljr Oct 4, 2023
d9c818d
updated to pipestat 0.6.0
khoroshevskyi Nov 7, 2023
e30fe6e
Merge branch 'dev' into new_pipestat
khoroshevskyi Nov 7, 2023
e00e8d8
updated requirements
khoroshevskyi Nov 7, 2023
39b6e99
testing, drop python 3.7
khoroshevskyi Nov 7, 2023
6914fd5
Merge pull request #198 from vreuter/vr/stage-log-message-197
khoroshevskyi Nov 7, 2023
1c2c844
fix f-string quote issue for python 3.10
donaldcampbelljr Nov 8, 2023
5b46682
minor refactor to use pipestat properties instead of cfg dict
donaldcampbelljr Nov 10, 2023
d360ba1
update changelog and version number
donaldcampbelljr Nov 10, 2023
4db1637
Merge pull request #199 from databio/new_pipestat
donaldcampbelljr Nov 10, 2023
4ea21c2
update v0.13.3 and changelog
donaldcampbelljr Nov 14, 2023
ed6b7fb
fix _refresh_stats bug and change version to 0.14.0
donaldcampbelljr Nov 14, 2023
b0c5f8d
potential fix for #201
donaldcampbelljr Nov 15, 2023
d7b9c8c
changelog
donaldcampbelljr Nov 15, 2023
f92d034
v0.14.0a1 prerelease
donaldcampbelljr Nov 15, 2023
1a677da
report_object -> change message_raw to be a values dict to conform wi…
donaldcampbelljr Nov 20, 2023
ed95993
self.pipestat_results_file should take priority over self.pipeline_st…
donaldcampbelljr Nov 20, 2023
cc84070
make pipestat_results_file = pipeline_stats_file if it is not provided
donaldcampbelljr Nov 27, 2023
2de4e84
set pipeline_stats_file if pipestat_results_file IS provided, remove …
donaldcampbelljr Nov 27, 2023
d544644
add pipestat_pipeline_type, defaulting to sample
donaldcampbelljr Dec 8, 2023
649c985
pipestat req version bump, v0.14.0a2 bump for pre-release
donaldcampbelljr Dec 14, 2023
9349aa8
v0.14.0 release prep
donaldcampbelljr Dec 22, 2023
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fix f-string quote issue for python 3.10
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@donaldcampbelljr
donaldcampbelljr committed Nov 8, 2023
commit 1c2c844dacf29c1d693af20e57f20e9cc1b60d4d
2 changes: 1 addition & 1 deletion pypiper/pipeline.py
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Expand Up @@ -330,7 +330,7 @@ def run(self, start_point=None, stop_before=None, stop_after=None):
# between results from different stages.
skip_mode = False

print(f"Running stage: {getattr(stage, "name", str(stage))}")
print(f"Running stage: {getattr(stage, 'name', str(stage))}")

stage.run()
self.executed.append(stage)
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2 changes: 1 addition & 1 deletion requirements/requirements-pypiper.txt
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Expand Up @@ -3,4 +3,4 @@ psutil
pandas
ubiquerg>=0.4.5
yacman
pipestat>=0.6.0a4
pipestat>=0.6.0a5