Moved tests.

Updated .travis.yml

.travis.yml

@@ -7,4 +7,4 @@ python:
 # command to install dependencies
 install: "pip install -r requirements.txt"
 # command to run tests
-script: pytest
+script: nosetests Tests/test_orthologs.py

Orthologs/Phylogenetics/PhyloTree/treeviz.py

@@ -9,7 +9,8 @@
 """
 from Bio import Phylo
 
-def drawtree(path2tree, treeformat='newick'):
-    """Import a newick formatted tree and visualize it."""
-    tree = Phylo.read(path2tree, treeformat)
-    Phylo.draw(tree)
+class TreeViz(object):
+    def drawtree(path2tree, treeformat='newick'):
+        """Import a newick formatted tree and visualize it."""
+        tree = Phylo.read(path2tree, treeformat)
+        Phylo.draw(tree)

Orthologs/__init__.py

@@ -1,2 +1,6 @@
-# -*- coding: utf-8 -*-
-
+## -*- coding: utf-8 -*-
+##import Align
+#import BioSQL
+#import CompGenetics
+#import Genbank
+#from Phylogenetics import Phylip, PAML, PhyML, PhyloTree

Tests/test_orthologs.py

@@ -1,9 +1,10 @@
 from unittest import TestCase
+from Orthologs.Phylogenetics import PhyloTree
 from Orthologs import Align
 
+# Under Development
 class Test(TestCase):
-    def test_is_string(self):
-        s = Align.joke()
-        self.assertTrue(isinstance(s))
+    def test(self):
+        help(PhyloTree)
+        help(Align)
 
-help(Align)

setup.py

@@ -35,15 +35,14 @@ def readme():
 # Set up an initial configuration file
 # //TODO-ROB: Set up a reconfiguration script for manual movements;  Make the script append to 'init.yaml'
 
-
-
+# Setup the package
 setup(
     name=name,
     author = 'Datasnakes',
     description="A project that will help to analyze orthologous genes.",
     version='0.1.0',
     long_description=readme(),
-    url='https://github.com/robear22890/Orthologs-Project',
+    url='https://github.com/datasnakes/Datasnakes-Scripts',
     license='?',
     classifiers=[
         'Development Status :: 3 - Alpha',