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 0.6.2_fixes

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lh3

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Commits on Jun 19, 2012

• r126: release bwa-0.6.2

  lh3

  committed
  09ee115

• rename the "api" branch as "master"

  lh3

  committed
  29ed2d8

Commits on Apr 18, 2012

• r124: updated version number

  lh3

  committed
  d97ff6b

• Merge branch 'master' into api

  lh3

  committed
  72f1a95

• r115: added -I and -S to bwasw

  lh3

  committed
  cd81868

Commits on Apr 17, 2012

• unnecessary large .sai output

  lh3

  committed
  4f61e2b

Commits on Apr 8, 2012

• updated APIs abit

  lh3

  committed
  9c486fa

• simplified bwa_se() interface

  lh3

  committed
  3b5a9e5

• complete single-end alignment

  lh3

  committed
  ca93a71

• preliminary doc

  lh3

  committed
  080726c

• compute CIGAR; rev seq not working

  lh3

  committed
  1cef219

Commits on Apr 7, 2012

• towards refined gapped; unfinished

  lh3

  committed
  66154ff

• API: aln seems working

  lh3

  committed
  a1abfe9

Commits on Apr 2, 2012

• commented out debugging code

  lh3

  committed
  cff4733

• updated revision number

  lh3

  committed
  790df95

• bugfix: incorrect bandwidth

  lh3

  committed
  36f2fd6

• debugging; bug persistant

  lh3

  committed
  d316980

• debugging code: bwasw has a rare bug

  lh3

  committed
  173b93d

Commits on Mar 29, 2012

• check *.64.bwt first and then *.bwt

  lh3

  committed
  d33abf1

• do not use .64 suffix by default

  lh3

  committed
  c875085

• Tim's suggestion suffix file name with .64

  lh3

  committed
  bdc953c

Commits on Mar 19, 2012

• bugfix: long-existing out-of-boundary bug

  lh3

  committed
  a471f19