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Commits on Apr 19, 2017

• Update README.md

  ddcap

  authored
  6e7dff8

Commits on May 31, 2016

• fixed remove duplicates

  ddecap

  committed
  ab61b3d

• chromosome not found error improved

  ddecap

  committed
  22f55d2

Commits on May 26, 2016

• updated doc, made picard default and elprep an option when a lot of memory is available.

  ddecap

  committed
  8220070

• updated memory for star rebuild genome to not use all resources for if a yarn cluster is shared but instead 32gb standard and half cores

  ddecap

  committed
  e8ad025

Commits on May 11, 2016

• updated memory for star aligner

  ddecap

  committed
  6489dd4

• added / to refdir when needed

  ddecap

  committed
  2dac8df

• updated doc and added better exception message

  ddecap

  committed
  b659483

• set minimum of 26 reduces

  ddecap

  committed
  bf364aa

• moved some debugging to v 3

  ddecap

  committed
  78f77ab

• fixed bug where pass 1 calculates wrong chrom regions

  ddecap

  committed
  b76400a

• fixed script bug, fixed rna refdir bug

  ddecap

  committed
  490a5ff

Commits on May 10, 2016

• fix mistake in hadoop docs

  ddecap

  committed
  d43ee66

• fix mistake in hadoop docs

  ddecap

  committed
  07fcd02

• added recipes to the docs

  ddecap

  committed
  5035d0e

• added recipes to the docs

  ddecap

  committed
  7adb1c7

• added recipes to the docs

  ddecap

  committed
  2d1b620

• updated the docs

  ddecap

  committed
  24545fe

• updated readme

  ddecap

  committed
  c78c266

• updated readme

  ddecap

  committed
  8a7c431

Commits on May 4, 2016

• updated hadoop install doc

  ddecap

  committed
  7f8c9a7

Commits on May 3, 2016

• update to the documentation

  ddecap

  committed
  b42ea32

• add one enter to README.md

  ddecap

  committed
  0f2078a

• updated example config

  ddecap

  committed
  d031438

• updated runHalvade.py

  ddecap

  committed
  1e5083d

• updated readme

  ddecap

  committed
  62469ca

• cleaning up github for release 1.2.0/removed unnecessary doc files

  ddecap

  committed
  2c4e4e0

• cleaning up github for release 1.2.0

  ddecap

  committed
  e1c7d9c

• removed gatk license

  ddecap

  committed
  bedc742

• removed gatk from bin.tar.gz

  ddecap

  committed
  69bb6c6

• added makefile to test doc

  ddecap

  committed
  9cc2d9e

Commits on May 2, 2016

• doc options update

  ddecap

  committed
  c471816

• updated doc

  ddecap

  committed
  eed445a

• updated all options

  ddecap

  committed
  0e131b4

• added example.config

  ddecap

  committed
  b65bad7

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