🔖 The Ultimate Markdown Cheatsheet

Classifier for metagenomic sequences

Searchable interactive texts to copy & paste text, run scripts, using easily exchangeable bundles

A tool for Racon polishing of miniasm assemblies

Python GUIs for Humans! PySimpleGUI is the top-rated Python application development environment. Launched in 2018 and actively developed, maintained, and supported in 2024. Transforms tkinter, Qt, …

A cheat sheet for bash commands.

Oxford Nanopore's Basecaller

Alignment viewer for linux terminal

CVR Viral Bioinformatics and Genomics course

Ultrafast de novo assembly for long noisy reads (though having no consensus step)

Posit Cheat Sheets - Can also be found at https://posit.co/resources/cheatsheets/.

The Reproducible Programming in R course, developed by the School of Biodiversity, One Health and Veterinary Medicine at the University of Glasgow.

Plotting scripts for long read sequencing data

RAxML Next Generation: faster, easier-to-use and more flexible

Scripts to download genomes from the NCBI FTP servers

This repository contains course material for Phillip Richmond's Introduction to Bioinformatics Analysis Course

Unix, R and python tools for genomics and data science

resources for learning bioinformatics

Tutorials to get started in bioinformatics

The second version of the Kraken taxonomic sequence classification system

Accelerated BLAST compatible local sequence aligner.

a Sequencing Quality Assessment Tool

Mummer alignment tool

Genome assembly evaluation tool

(Not Offical) BBMap short read aligner, and other bioinformatic tools.

De novo assembler for single molecule sequencing reads using repeat graphs

Sequence correction provided by ONT Research

The ARTIC field bioinformatics pipeline