phyd3_ex

Example websites built using the PhyD3 library (both using node modules and the GitHub repo code)

File Descriptions

ex.html

This website was built with the instructions on the PhyD3 website

web.html

This website was built with the instructions on the GitHub repository

sample.xml

This is a very simple example input file

test.xml

A more complex PhyloXML example based on the website documentation; only seems to work with the GitHub-based package

Instructions

1. The html files were placed in my copy of the GitHub repo, which is also where I installed the current node modules. So, notice the files have relative path references to my local files, which may need to be changed on your copy.
2. I ran a local web server to allow the XML files to be read; this can be done in a variety of ways, but I followed these instructions

It is possible you will need to install/cleanup references to the package dependencies.

Other Websites Using PhyD3

evolklust
Phylogenetic Tree for sequences related to: P11653 - Methylmalonyl-CoA mutase