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Achievements

Achievement: YOLOAchievement: Pull Sharkx3Achievement: StarstruckAchievement: QuickdrawAchievement: Arctic Code Vault Contributor

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  • TreeProfiler Public

    Forked from compgenomicslab/TreeProfiler

    tree visualization for tree + annotation data

    Python 1 GNU General Public License v3.0 Updated Jan 26, 2025

  • ete4_gallery Public

    Jupyter Notebook Updated Jan 19, 2025

  • ete Public

    Forked from etetoolkit/ete

    Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the …

    Python GNU General Public License v3.0 Updated Dec 25, 2024

  • claudia_thesis_repo Public

    Tree repository for Claudia Sanchis

    HTML Updated Dec 11, 2024

  • pastml Public

    Forked from evolbioinfo/pastml

    Ancestral character reconstruction and visualisation for rooted phylogenetic trees

    Python GNU General Public License v3.0 Updated Nov 7, 2024

  • treeprofiler_gallery Public

    treeprofiler_gallery

    Updated Oct 15, 2024

  • ete4-build Public

    ete4-build with nextflow

    Python Updated Sep 29, 2024

  • treeprofiler_demo Public

    fast demo for treeprofiler 2024

    Shell Updated Jun 20, 2024

  • pertpy Public

    Forked from scverse/pertpy

    Perturbation Analysis in the scverse ecosystem.

    Python MIT License Updated May 29, 2024

  • PhyloToolkit Public

    A command-line tool to generator random phylogenetic tree with given list of names or tips number

    Python Updated May 25, 2024

  • ete-data Public

    Forked from etetoolkit/ete-data

    Data files to use with the ETE Toolkit

    Python GNU General Public License v3.0 Updated May 22, 2024

  • MAPLE Public

    Forked from NicolaDM/MAPLE

    MAPLE - a new approximate approach for maximum likelihood phylogenetics at short divergence.

    Python GNU General Public License v3.0 Updated Nov 15, 2023

  • esmfold_playgroud Public

    just to play esmfold

    Python Updated Sep 28, 2023

  • bigtree Public

    Forked from kayjan/bigtree

    Tree Implementation for Python, integrated with Python list, dictionary, and pandas DataFrame.

    Python MIT License Updated Aug 11, 2023

  • pygbif Public

    Forked from gbif/pygbif

    GBIF Python client

    Python MIT License Updated Jul 31, 2023

  • biom-format Public

    Forked from biocore/biom-format

    The Biological Observation Matrix (BIOM) Format Project

    Python Other Updated Jul 28, 2023

  • foldseek Public

    Forked from steineggerlab/foldseek

    Foldseek enables fast and sensitive comparisons of large structure sets.

    C GNU General Public License v3.0 Updated Jul 19, 2023

  • Pear-EBI Public

    Forked from AndreaRubbi/Pear-EBI

    Calculates distances of trees in large collections. Embeds distances and plot the embeddings with dynamic interfaces.

    Jupyter Notebook MIT License Updated Jun 13, 2023

  • opentree Public

    Forked from OpenTreeOfLife/opentree

    Opentree browsing and curation web site. For overarching or cross-repo concerns, please see the 'germinator' repo.

    JavaScript BSD 2-Clause "Simplified" License Updated May 17, 2023

  • GToTree Public

    Forked from AstrobioMike/GToTree

    A user-friendly workflow for phylogenomics

    Shell GNU General Public License v3.0 Updated Feb 2, 2023

  • peptides.py Public

    Forked from althonos/peptides.py

    Physicochemical properties, indices and descriptors for amino-acid sequences.

    Python GNU General Public License v3.0 Updated Jan 11, 2023

  • GTDB-id-convertor Public

    convert GCA id to GCF id in GTDB

    Python Updated Jan 10, 2023

  • eggnog-mapper Public

    Forked from eggnogdb/eggnog-mapper

    Fast genome-wide functional annotation through orthology assignment

    Python GNU Affero General Public License v3.0 Updated Jul 19, 2022

  • ete4-explore Public

    ete4 explore to generate tree img

    Roff Updated Jul 4, 2022

  • empress Public

    Forked from biocore/empress

    A fast and scalable phylogenetic tree viewer for microbiome data analysis

    JavaScript BSD 3-Clause "New" or "Revised" License Updated May 20, 2022

  • PLUSplacer Public

    Forked from chry04/PLUSplacer
    Python MIT License Updated May 16, 2022

  • NGS-study Public

    R Updated Apr 3, 2022

  • export2graphlan Public

    Forked from SegataLab/export2graphlan

    Conversion software tool for producing both annotation and tree files for GraPhlAn

    Python MIT License Updated Feb 2, 2022

  • auto-fill_horarios Public

    fill tedious register horarios with one line

    Python Updated Jun 25, 2021

  • ProgrammingAssignment2 Public

    Forked from rdpeng/ProgrammingAssignment2

    Repository for Programming Assignment 2 for R Programming on Coursera

    R Updated May 9, 2021