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Achievements

Achievement: Arctic Code Vault ContributorAchievement: StarstruckAchievement: Pull Shark

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@UCSantaCruzComputationalGenomicsLab

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  • structureHarvester Public

    Structure Harvester is a program for parsing the output of Pritchard's STRUCTURE and for performing the Evanno method.

    Python 28 21 Other Updated Jul 9, 2022

  • mafTools Public

    Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.

    C 106 32 Other Updated Jun 17, 2022

  • commute-time-tracker Public

    Forked from lmanul/commute-time-tracker

    A simple web page that uses the Google maps API to track time spent in traffic

    HTML Other Updated Jan 11, 2017

  • mwgAlignAnalysis Public

    Multiple Whole Genome Alignment Testing Suite

    Python 3 2 Other Updated Mar 2, 2015

  • mus_strain_cactus Public

    Code, docs and experiments for the MSCA project.

    Python 1 Other Updated Jan 6, 2015

  • quick_plot Public

    quick_plot is a python program that plots one or two column flat files from the command line.

    Python 9 1 Other Updated Oct 20, 2014

  • simpleHilbertCurve Public

    Script to plot 1D data in 2D using the Hilbert Curve. Honestly a pretty terrible visualization technique for conveying information, but it looks cool.

    Python 39 7 Other Updated Oct 20, 2014

  • n50PlottingTools Public

    Tools to create plots showing N-statistics for genome assemblies

    Python 4 1 Other Updated Sep 26, 2014

  • stem Public

    The R function stem() ported to run on the command line for use in pipes!

    C 5 2 GNU General Public License v2.0 Updated Aug 14, 2014

  • heartbleed-masstest Public

    Forked from musalbas/heartbleed-masstest

    CVE-2014-0160 mass scan on the Alexa top sites.

    Python Other Updated Apr 9, 2014

  • assemblAnalysis Public

    Analysis scripts to generate Tables and Figures for Assemblathon 1

    Python 7 Other Updated Nov 7, 2013

  • cairo_visualization_wheel Public

    cairo_visualization_wheel is a Python script that uses matplotlib to create visualization wheels as seen in Alberto Cairo's book The Functional Art http://www.thefunctionalart.com/2012/09/download-…

    Python 4 3 Other Updated Oct 4, 2013

  • authorAffiliations Public

    Script to handle superscripted numbers for academic papers that have many authors (>20) and complex affiliations

    Python 3 Other Updated Oct 4, 2013

  • summary Public

    summary() from the R project refactored to run on the command line for use in pipes!

    C 3 GNU General Public License v2.0 Updated Oct 1, 2013

  • ascii_plots Public

    Forked from dzerbino/ascii_plots

    Convenience function for quick and dirty data analysis

    JavaScript Updated Nov 24, 2012

  • StatSigMA-w Public

    Given a multiple sequence alignment and a phylogeny relating the aligned sequences, StatSigMAw assesses every site of the alignment and identifies suspiciously aligned regions in the alignment. Xia…

    C 1 Other Updated Oct 13, 2012

  • faMask Public

    Utility to mask fasta formated files using a .bed file to define the regions to mask.

    C 1 Other Updated Aug 12, 2012

  • spia_c Public

    Signaling Pathway Impact Analysis (SPIA) refactored into C

    C 1 1 Other Updated Jul 10, 2012

  • evolverSimControl Public

    jobTree based python wrapper to run the genome simulation tool suite Evolver

    Python 9 1 Other Updated Apr 27, 2012

  • evolverInfileGeneration Public

    Scripts and Makefile to generate infile set for the Evolver suite of genome evolution simulation tools.

    Python 1 Other Updated Apr 18, 2012

  • mafJoin Public

    mafJoin is a tool for combining pairs of MAF files that share a common sequence.

    Python 2 Other Updated Mar 15, 2012

  • fisherWrightCoalPlotter Public

    A script to make Fisher-Wright Coalescent plots using dot from graphviz

    Python 2 Other Updated Mar 3, 2012

  • avgViewer Public

    Ancestral Variation Graph (AVG) viewer in javascript

    JavaScript 2 Other Updated Oct 17, 2011