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Updated input and output data schema and examples to use explicit fil…
…es/json members as opposed to type identified objects.
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,83 +1,80 @@ | ||
| { | ||
| "manifestVersion": "0.0.1", | ||
| "jobs": | ||
| [ | ||
| { | ||
| "name": "my-algorithm", | ||
| "version": "1.0.0", | ||
| "title": "My first algorithm", | ||
| "description": "Reads an HDF5 file and outputs two TIFF images, a CSV and manifest containing cell_count", | ||
| "tag": ["hdf5", "tiff", "csv", "image processing"], | ||
| "authorName": "John Doe", | ||
| "authorUrl": "http://www.example.com", | ||
| "timeout": 3600, | ||
| "cpus": 10.0, | ||
| "mem": 10240.0, | ||
| "storage": 0.0, | ||
| "interface": { | ||
| "cmd": "/app/job.sh", | ||
| "args": "${INPUT_FILE} ${JOB_OUTPUT_DIR}", | ||
| "inputData": [ | ||
| { | ||
| "name": "INPUT_FILE", | ||
| "type": "file", | ||
| "required": true, | ||
| "content": { | ||
| "mediaType": [ "image/x-hdf5-image" ] | ||
| } | ||
| } | ||
| ], | ||
| "outputData": [ | ||
| { | ||
| "name": "output_file_tiffs", | ||
| "type": "file", | ||
| "required": true, | ||
| "content": { | ||
| "mediaType": "image/tiff", | ||
| "count": "2", | ||
| "pattern": "outfile*.tif" | ||
| } | ||
| }, | ||
| { | ||
| "name": "output_file_csv", | ||
| "type": "file", | ||
| "required": true, | ||
| "content": { | ||
| "mediaType": "text/csv", | ||
| "pattern": "outfile*.csv" | ||
| } | ||
| }, | ||
| { | ||
| "name": "cell_count", | ||
| "type": "json", | ||
| "required": true, | ||
| "content": { | ||
| "key": "cell_count", | ||
| "type": "integer" | ||
| } | ||
| } | ||
| ] | ||
| }, | ||
| "errorMapping": [ | ||
| { | ||
| "code": 1, | ||
| "title": "Error Name", | ||
| "description": "Error Description", | ||
| "category": "system" | ||
| }, | ||
| { | ||
| "code": 2, | ||
| "title": "Error Name", | ||
| "description": "Error Description", | ||
| "category": "data" | ||
| }, | ||
| { | ||
| "code": 3, | ||
| "title": "Error Name", | ||
| "description": "Error Description", | ||
| "category": "algorithm" | ||
| } | ||
| ] | ||
| } | ||
| ] | ||
| "manifestVersion": "0.0.1", | ||
| "jobs": [ | ||
| { | ||
| "name": "my-algorithm", | ||
| "version": "1.0.0", | ||
| "title": "My first algorithm", | ||
| "description": "Reads an HDF5 file and outputs two TIFF images, a CSV and manifest containing cell_count", | ||
| "tag": [ | ||
| "hdf5", | ||
| "tiff", | ||
| "csv", | ||
| "image processing" | ||
| ], | ||
| "authorName": "John Doe", | ||
| "authorUrl": "http://www.example.com", | ||
| "timeout": 3600, | ||
| "cpus": 10.0, | ||
| "mem": 10240.0, | ||
| "storage": 0.0, | ||
| "interface": { | ||
| "cmd": "/app/job.sh", | ||
| "args": "${INPUT_FILE} ${JOB_OUTPUT_DIR}", | ||
| "inputData": { | ||
| "files": [ | ||
| { | ||
| "name": "INPUT_FILE", | ||
| "required": true, | ||
| "mediaType": [ | ||
| "image/x-hdf5-image" | ||
| ] | ||
| } | ||
| ] | ||
| }, | ||
| "outputData": { | ||
| "files": [ | ||
| { | ||
| "name": "output_file_tiffs", | ||
| "mediaType": "image/tiff", | ||
| "count": "2", | ||
| "pattern": "outfile*.tif" | ||
| }, | ||
| { | ||
| "name": "output_file_csv", | ||
| "mediaType": "text/csv", | ||
| "pattern": "outfile*.csv" | ||
| } | ||
| ], | ||
| "json": [ | ||
| { | ||
| "name": "cell_count", | ||
| "key": "cellCount", | ||
| "type": "integer" | ||
| } | ||
| ] | ||
| } | ||
| }, | ||
| "errorMapping": [ | ||
| { | ||
| "code": 1, | ||
| "title": "Error Name", | ||
| "description": "Error Description", | ||
| "category": "system" | ||
| }, | ||
| { | ||
| "code": 2, | ||
| "title": "Error Name", | ||
| "description": "Error Description", | ||
| "category": "data" | ||
| }, | ||
| { | ||
| "code": 3, | ||
| "title": "Error Name", | ||
| "description": "Error Description", | ||
| "category": "algorithm" | ||
| } | ||
| ] | ||
| } | ||
| ] | ||
| } |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
|
|
@@ -12,7 +12,7 @@ | |
| "cpus": 0.1, | ||
| "mem": 1.0, | ||
| "interface": { | ||
| "cmd": "/app/job.sh", | ||
| "cmd": "/app/job.sh" | ||
| } | ||
| } | ||
| ] | ||
|
|
||
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,49 +1,46 @@ | ||
| { | ||
| "manifestVersion": "0.0.1", | ||
| "jobs": | ||
| [ | ||
| { | ||
| "name": "image-watermark", | ||
| "version": "0.1.0", | ||
| "title": "Image Watermarker", | ||
| "description": "Processes an input PNG and outputs watermarked PNG.", | ||
| "authorName": "John Doe", | ||
| "timeout": 30, | ||
| "cpus": 1.0, | ||
| "mem": 64.0, | ||
| "interface": { | ||
| "cmd": "/app/watermark.py", | ||
| "args": "${INPUT_IMAGE} ${JOB_OUTPUT_DIR}", | ||
| "inputData": [ | ||
| { | ||
| "name": "INPUT_IMAGE", | ||
| "type": "file", | ||
| "required": true, | ||
| "content": { | ||
| "mediaType": [ "image/png" ] | ||
| } | ||
| } | ||
| ], | ||
| "outputData": [ | ||
| { | ||
| "name": "OUTPUT_IMAGE", | ||
| "type": "file", | ||
| "required": true, | ||
| "content": { | ||
| "mediaType": "image/png", | ||
| "pattern": "*_watermark.png" | ||
| } | ||
| } | ||
| ] | ||
| }, | ||
| "errorMapping": [ | ||
| { | ||
| "code": 1, | ||
| "title": "Image Corrupt", | ||
| "description": "Image input is not recognized as a valid PNG.", | ||
| "category": "data" | ||
| } | ||
| ] | ||
| } | ||
| ] | ||
| "manifestVersion": "0.0.1", | ||
| "jobs": [ | ||
| { | ||
| "name": "image-watermark", | ||
| "version": "0.1.0", | ||
| "title": "Image Watermarker", | ||
| "description": "Processes an input PNG and outputs watermarked PNG.", | ||
| "authorName": "John Doe", | ||
| "timeout": 30, | ||
| "cpus": 1.0, | ||
| "mem": 64.0, | ||
| "interface": { | ||
| "cmd": "/app/watermark.py", | ||
| "args": "${INPUT_IMAGE} ${JOB_OUTPUT_DIR}", | ||
| "inputData": { | ||
| "files": [ | ||
| { | ||
| "name": "INPUT_IMAGE", | ||
| "mediaType": [ | ||
| "image/png" | ||
| ] | ||
| } | ||
| ] | ||
| }, | ||
| "outputData": { | ||
| "files": [ | ||
| { | ||
| "name": "OUTPUT_IMAGE", | ||
| "mediaType": "image/png", | ||
| "pattern": "*_watermark.png" | ||
| } | ||
| ] | ||
| } | ||
| }, | ||
| "errorMapping": [ | ||
| { | ||
| "code": 1, | ||
| "title": "Image Corrupt", | ||
| "description": "Image input is not recognized as a valid PNG.", | ||
| "category": "data" | ||
| } | ||
| ] | ||
| } | ||
| ] | ||
| } |
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