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Updating standard naming to JobPack. Adding initial samples and schema.
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Jonathan Meyer
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Jun 4, 2016
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| ## JetBrains IDE directorys: | ||
| .idea/ |
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| @@ -1,2 +1,2 @@ | ||
| # cjds | ||
| Containerized Job Definition Standard | ||
| # JobPack | ||
| JobPack - containerized job package standard |
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| @@ -0,0 +1,75 @@ | ||
| [ | ||
| { | ||
| "name": "my-algorithm", | ||
| "version": "1.0.0", | ||
| "title": "My first algorithm", | ||
| "description": "Reads an HDF5 file and outputs two TIFF images and a CSV", | ||
| "author_name": "John_Doe", | ||
| "author_url": "http://www.example.com", | ||
| "timeout": 3600, | ||
| "cpus_required": 10.0, | ||
| "mem_required": 10240.0, | ||
| "disk_out_const_required": 0.0, | ||
| "disk_out_mult_required": 0.0, | ||
| "interface": { | ||
| "output_data": [ | ||
| { | ||
| "media_type": "image/tiff", | ||
| "required": true, | ||
| "type": "file", | ||
| "name": "output_file_tif", | ||
| "glob": "outfile1*.tif" | ||
| }, | ||
| { | ||
| "media_type": "image/tiff", | ||
| "required": true, | ||
| "type": "file", | ||
| "name": "output_file_tif2", | ||
| "glob": "outfile2*.tif" | ||
| }, | ||
| { | ||
| "media_type": "text/csv", | ||
| "required": true, | ||
| "type": "file", | ||
| "name": "output_file_csv", | ||
| "glob": "outfile*.csv" | ||
| } | ||
| ], | ||
| "command_arguments": "${input_file} ${job_output_dir}", | ||
| "input_data": [ | ||
| { | ||
| "media_types": [ | ||
| "image/x-hdf5-image" | ||
| ], | ||
| "required": true, | ||
| "type": "file", | ||
| "name": "input_file" | ||
| } | ||
| ], | ||
| "command": "/app/my_wrapper.sh" | ||
| }, | ||
| "error_mapping": [ | ||
| { | ||
| "code": 1, | ||
| "name": "ErrorName", | ||
| "title": "Error Title", | ||
| "description": "Error Description", | ||
| "category": "SYSTEM" | ||
| }, | ||
| { | ||
| "code": 2, | ||
| "name": "ErrorName", | ||
| "title": "Error Title", | ||
| "description": "Error Description", | ||
| "category": "DATA" | ||
| }, | ||
| { | ||
| "code": 3, | ||
| "name": "ErrorName", | ||
| "title": "Error Title", | ||
| "description": "Error Description", | ||
| "category": "ALGORITHM" | ||
| } | ||
| ] | ||
| } | ||
| ] |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,168 @@ | ||
| { | ||
| "$schema": "http://json-schema.org/draft-04/schema#", | ||
| "type": "array", | ||
| "items": { | ||
| "type": "object", | ||
| "properties": { | ||
| "name": { | ||
| "type": "string" | ||
| }, | ||
| "version": { | ||
| "type": "string" | ||
| }, | ||
| "title": { | ||
| "type": "string" | ||
| }, | ||
| "description": { | ||
| "type": "string" | ||
| }, | ||
| "author_name": { | ||
| "type": "string" | ||
| }, | ||
| "author_url": { | ||
| "type": "string" | ||
| }, | ||
| "timeout": { | ||
| "type": "integer" | ||
| }, | ||
| "cpus_required": { | ||
| "type": "number" | ||
| }, | ||
| "mem_required": { | ||
| "type": "number" | ||
| }, | ||
| "disk_out_const_required": { | ||
| "type": "number" | ||
| }, | ||
| "disk_out_mult_required": { | ||
| "type": "number" | ||
| }, | ||
| "interface": { | ||
| "type": "object", | ||
| "properties": { | ||
| "output_data": { | ||
| "type": "array", | ||
| "items": { | ||
| "type": "object", | ||
| "properties": { | ||
| "media_type": { | ||
| "type": "string" | ||
| }, | ||
| "required": { | ||
| "type": "boolean", | ||
| "default": true | ||
| }, | ||
| "type": { | ||
| "type": "string" | ||
| }, | ||
| "name": { | ||
| "type": "string" | ||
| }, | ||
| "glob": { | ||
| "type": "string" | ||
| } | ||
| }, | ||
| "required": [ | ||
| "media_type", | ||
| "type", | ||
| "name", | ||
| "glob" | ||
| ] | ||
| } | ||
| }, | ||
| "command_arguments": { | ||
| "type": "string" | ||
| }, | ||
| "input_data": { | ||
| "type": "array", | ||
| "items": { | ||
| "type": "object", | ||
| "properties": { | ||
| "media_types": { | ||
| "type": "array", | ||
| "items": { | ||
| "type": "string" | ||
| } | ||
| }, | ||
| "required": { | ||
| "type": "boolean" | ||
| }, | ||
| "type": { | ||
| "type": "string" | ||
| }, | ||
| "name": { | ||
| "type": "string" | ||
| } | ||
| }, | ||
| "required": [ | ||
| "media_types", | ||
| "required", | ||
| "type", | ||
| "name" | ||
| ] | ||
| } | ||
| }, | ||
| "command": { | ||
| "type": "string" | ||
| } | ||
| }, | ||
| "required": [ | ||
| "output_data", | ||
| "command_arguments", | ||
| "input_data", | ||
| "command" | ||
| ] | ||
| }, | ||
| "error_mapping": { | ||
| "type": "array", | ||
| "items": { | ||
| "type": "object", | ||
| "properties": { | ||
| "code": { | ||
| "type": "integer" | ||
| }, | ||
| "name": { | ||
| "type": "string" | ||
| }, | ||
| "title": { | ||
| "type": "string" | ||
| }, | ||
| "description": { | ||
| "type": "string" | ||
| }, | ||
| "category": { | ||
| "type": "string", | ||
| "enum": [ | ||
| "ALGORITHM", | ||
| "DATA", | ||
| "SYSTEM" | ||
| ] | ||
| } | ||
| }, | ||
| "required": [ | ||
| "code", | ||
| "name", | ||
| "title", | ||
| "description", | ||
| "category" | ||
| ] | ||
| } | ||
| } | ||
| }, | ||
| "required": [ | ||
| "name", | ||
| "version", | ||
| "title", | ||
| "description", | ||
| "author_name", | ||
| "author_url", | ||
| "timeout", | ||
| "cpus_required", | ||
| "mem_required", | ||
| "disk_out_const_required", | ||
| "disk_out_mult_required", | ||
| "interface", | ||
| "error_mapping" | ||
| ] | ||
| } | ||
| } |