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  • MScausality Public

    Causal inference methods for mass spectrometry(MS)-based proteomics

    Jupyter Notebook 1 Updated Nov 28, 2024

  • devonjkohler.github.io Public

    Forked from academicpages/academicpages.github.io

    Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

    JavaScript MIT License Updated Jun 23, 2024

  • MSstatsBayes Public

    R Updated May 25, 2024

  • GeneSetValidator Public

    R package to check correlations in MSigDB pathways using MS-based proteomics experimental data.

    R Apache License 2.0 Updated Sep 20, 2023

  • y0 Public

    Forked from y0-causal-inference/y0

    ❓y0 (pronounced "why not?") is for causal inference in Python

    Jupyter Notebook BSD 3-Clause "New" or "Revised" License Updated Sep 11, 2023

  • MSstatsShinyDocker Public

    Contains the docker image for MSstatsShiny

    Dockerfile Updated Jun 3, 2023

  • MSbayesImp Public

    Jupyter Notebook Updated May 26, 2023

  • single_cell_scm Public

    Jupyter Notebook MIT License Updated Feb 21, 2023

  • MSstatsPTM_simulations Public

    Repository containing the simulation data and analysis used to evaluate MSstatsPTM

    R 2 Updated Aug 9, 2022

  • BiosysInference Public

    Python Updated Jun 24, 2022

  • sbi Public

    Forked from sbi-dev/sbi

    Simulation-based inference toolkit

    Python GNU Affero General Public License v3.0 Updated May 12, 2022

  • gillespiePPL Public

    The Gillespie algorithm implemented in different probabilistic programming languages.

    Jupyter Notebook 1 Updated Mar 17, 2022

  • ProPPA Public

    Forked from ageorgou/ProPPA

    Source code for the implementation of the ProPPA platform

    Python Other Updated Jan 23, 2022

  • bioscrapePPL Public

    Probabilistic Programming implementation of bioscrape pacakge

    Cython Updated Dec 19, 2021

  • pyprob Public

    Forked from pyprob/pyprob

    A probabilistic programming system for simulators and high-performance computing (HPC), based on PyTorch

    Python BSD 2-Clause "Simplified" License Updated Dec 17, 2021

  • sysbioDMM Public

    Jupyter Notebook MIT License Updated Nov 3, 2021

  • causal-prog-rule-models Public

    Jupyter Notebook 1 Apache License 2.0 Updated Oct 27, 2021

  • Causal_Inference_Project Public

    Jupyter Notebook 3 1 Apache License 2.0 Updated Oct 27, 2021

  • MSstatsTMTPTM Public

    Forked from Vitek-Lab/MSstatsTMTPTM

    R-based package for detecting differencially abundant post translational modifications (PTM) in shotgun mass spectrometry-bsed proteomic experiments with tandem mass tag (TMT) labeling

    R Updated Oct 23, 2021

  • dkohler Public

    Jupyter Notebook Updated Oct 23, 2021

  • MSstatsLiP Public

    Forked from Vitek-Lab/MSstatsLiP
    R Updated Oct 18, 2021

  • MSstatsPTM Public

    Forked from Vitek-Lab/MSstatsPTM

    Post Translational Modification (PTM) Significance Analysis in shotgun mass spectrometry-based proteomic experiments

    R GNU General Public License v3.0 Updated Oct 6, 2021

  • bioscrape Public

    Forked from biocircuits/bioscrape

    BioSCRAPE (Bio-circuit Stochastic Single-cell Reaction Analysis and Parameter Estimation)

    Jupyter Notebook MIT License Updated Sep 20, 2021

  • Omega_Implementations Public

    A variety of models implemented using the probabilistic programming language Omega

    Jupyter Notebook 1 1 Apache License 2.0 Updated May 6, 2021