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Commits on May 19, 2014

• Release bwa-0.7.9-r782

  lh3

  committed
  e4752b3

Commits on Jan 5, 2014

• fix duplicate PG lines in bwape and bwase

  bpow

  committed
  c26ba4e

Commits on Nov 25, 2013

• r424: fixed a bw bug in samse/pe

  lh3

  committed
  8b6ec74

Commits on May 30, 2013

• Release bwa-0.7.5a

  lh3

  committed
  7ec8b5c

Commits on May 28, 2013

• r401: bugfix - forgot to change sampe

  Show description for 7361975
  lh3

  committed
  7361975

Commits on May 25, 2013

• updated README

  lh3

  committed
  607e11d

Commits on May 24, 2013

• r397: multi changes/bugfixes to bwa-backtrack

  Show description for 599e840
  lh3

  committed
  599e840

Commits on May 2, 2013

• Reduce dependency on utils.h - new malloc wrapping scheme.

  Show description for 96e445d
  

  Rob Davies

  committed
  96e445d

Commits on Apr 29, 2013

• Ensure exit status of 1 if given invalid options or index files are not found.

  Show description for 0aa7e0a
  

  Rob Davies

  committed
  0aa7e0a

• Merge branch 'master' into master_fixes. Merged up to r389.

  Show description for e885296
  

  Rob Davies

  committed
  e885296

Commits on Apr 24, 2013

• r386: bugfix - samse/pe segfault

  Show description for 8896cb9
  lh3

  committed
  8896cb9

Commits on Apr 11, 2013

• Merge branch 'master' into master_fixes. Merged up to master r375.

  Show description for 90ecd34
  

  Rob Davies

  committed
  90ecd34

Commits on Apr 10, 2013

• r375: fixed compiling errors by the last change

  lh3

  committed
  4752013

Commits on Mar 8, 2013

• Merge branch 'master' into master_fixes

  Show description for aabd990
  

  Rob Davies

  committed
  aabd990

Commits on Mar 7, 2013

• r336: fine tuning pemerge

  lh3

  committed
  72817b6

Commits on Mar 6, 2013

• r331: rewrote CIGAR generation for bwa-short

  Show description for 6476343
  lh3

  committed
  6476343

Commits on Mar 5, 2013

• r329: ditch stdaln.{c,h}; no changes to bwa-mem

  Show description for 98f8966
  lh3

  committed
  98f8966

• replace aln_global in bwase.c

  lh3

  committed
  bb37e14

Commits on Mar 1, 2013

• Merge branch 'master' into master_fixes

  Show description for 3d33ab0
  

  Rob Davies

  committed
  3d33ab0

Commits on Feb 23, 2013

• fixed a couple bugs identified by gcc

  Show description for cda85be
  lh3

  committed
  cda85be

• support read group in bwa-mem

  lh3

  committed
  ee4540c

• cleanup index loading code

  lh3

  committed
  cfa7165

• removed a few unused variables

  Show description for 904c320
  lh3

  committed
  904c320

Commits on Feb 22, 2013

• minor code clean up

  Show description for f122fad
  lh3

  committed
  f122fad

Commits on Feb 12, 2013

• removed color-space support

  Show description for 6ad5a3c
  lh3

  committed
  6ad5a3c

Commits on Jan 9, 2013

• Added wrappers for fputc and fputs; more efficient sequence printing

  Show description for 4f4e998
  

  Rob Davies

  committed
  4f4e998

Commits on Dec 16, 2012

• Use wrapper functions to catch system errors

  Show description for b081ac9
  

  Rob Davies

  committed
  b081ac9

Commits on Apr 8, 2012

• compute CIGAR; rev seq not working

  lh3

  committed
  1cef219

Commits on Apr 7, 2012

• towards refined gapped; unfinished

  lh3

  committed
  66154ff

Commits on Mar 29, 2012

• Tim's suggestion suffix file name with .64

  lh3

  committed
  bdc953c

Commits on Mar 19, 2012

• bugfix: long-existing out-of-boundary bug

  lh3

  committed
  a471f19

Commits on Nov 19, 2011

• avoid duplicated XA tags

  

  Heng Li

  committed
  dc40089

Commits on Oct 25, 2011

• fixed a minor issue about +/-1

  

  Heng Li

  committed
  7664795

• concatenate for-rev sequences in the end

  

  Heng Li

  committed
  aabb807

Commits on Oct 24, 2011

• bugfix: integer overflow and strand error in sampe

  

  Heng Li

  committed
  7b4266a

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