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Update external page (scverse#2400)
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* Update external page

* Remove dev instructions for external
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ivirshup authored Feb 15, 2023
1 parent b8277aa commit de05de6
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28 changes: 0 additions & 28 deletions docs/dev/external-tools.md

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1 change: 0 additions & 1 deletion docs/dev/index.md
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getting-set-up
testing
documentation
external-tools
ci
release
versioning
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14 changes: 10 additions & 4 deletions docs/external.md
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.. currentmodule:: scanpy.external
```

```{warning}
We are no longer accepting new tools into `scanpy.external`.
Instead, please submit your tool to the [scverse ecosystem package listing](https://scverse.org/packages/#ecosystem).
```

```{note}
More tools that integrate well with scanpy and anndata can be found on the {doc}`ecosystem page <../ecosystem>`.
For tools that integrate well with scanpy and anndata, see:
* The [scverse ecosystem](https://scverse.org/packages/#ecosystem)
* Scanpy's ecosystem {doc}`ecosystem page <../ecosystem>`
```

Import Scanpy's wrappers to external tools as:
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import scanpy.external as sce
```

If you'd like to include a tool here, consider making a pull request ({doc}`instructions <../dev/external-tools>`).
If the tool already uses `scanpy` or `anndata`, it may fit better in the {doc}`ecosystem page <../ecosystem>`.

## Preprocessing: PP

### Data integration
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