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Commits on Apr 19, 2023

• Merge branch 'master' into master

  Zethson

  authored
  63142f7

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• Simpler tocsr

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  Zethson

  and

  adamgayoso

  authored
  6369a0b

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Commits on Apr 17, 2023

• Spaceranger 2.1.0: Modify 10x reader to read probe barcode matrix (scverse#2470)

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  govinda-kamath

  and

  mattcai10x

  authored
  ab2177c

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• Pass delimiter to read_csv (scverse#1969)

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  WeilerP

  and

  Zethson

  authored
  e79fcda

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• PCA fix random_state (scverse#2469)

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  KalinNonchev

  and

  pre-commit-ci[bot]

  authored
  ff291d6

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Commits on Apr 12, 2023

• Corrected method name (scverse#2467)

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  namsaraeva

  and

  Zethson

  authored
  b863ce0

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• Fix CheckBuild job (scverse#2468)

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  flying-sheep

  and

  Zethson

  authored
  aefac50

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• Fix normalize_total for dask (scverse#2466)

  flying-sheep

  authored
  554b226

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Commits on Apr 11, 2023

• Fix Alex name

  Zethson

  authored
  3e3427d

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• Add scverse citation & restructure scanpy citation (scverse#2463)

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  Zethson

  authored
  a341e02

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Commits on Apr 2, 2023

• updated read_visium() to read in spaceranger 2.0 files (scverse#2424)

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  LLehner

  and

  giovp

  authored
  7fc56a5

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Commits on Mar 16, 2023

• Issue-1673 (scverse#2452)

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  snigdhaAgarwal

  and

  Snigdha Agarwal

  authored
  9969734

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Commits on Mar 15, 2023

• Increase ubuntu version & python version for azure CI (scverse#2447)

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  Zethson

  authored
  ada761b

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Commits on Mar 2, 2023

• Prepare for pandas 2.0 (scverse#2434)

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  ivirshup

  authored
  0692ef9

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Commits on Mar 1, 2023

• Update hashsolo docstring (scverse#2429)

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  martinkim0

  authored
  17e9aae

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Commits on Feb 17, 2023

• Update dev branch (scverse#2421)

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  ivirshup

  authored
  27493a4

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• Revert "Stephen/spaceranger2.0 (scverse#2296)" (scverse#2422)

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  ivirshup

  authored
  d64282a

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Commits on Feb 16, 2023

• update anndata-dev tests to install anndata test deps (scverse#2420)

  ivirshup

  authored
  2dda1b6

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Commits on Feb 15, 2023

• update ecosystem page (scverse#2417)

  adamgayoso

  authored
  00f8729

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• Doc overhaul (scverse#2220)

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  adamgayoso

  and

  flying-sheep

  authored
  2b28b57

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• Stephen/spaceranger2.0 (scverse#2296)

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  3 peopleauthored
  619bd77

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• Remove usage of ABC (scverse#2414)

  ivirshup

  authored
  1313f7b

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• remove pre-commit workflow (scverse#2206)

  flying-sheep

  authored
  0fec570

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• Revert "Update external page (scverse#2400)" (scverse#2415)

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  adamgayoso

  authored
  dbfec2f

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• [pre-commit.ci] pre-commit autoupdate (scverse#2373)

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  pre-commit-ci[bot]

  and

  flying-sheep

  authored
  ef715f1

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• Stop ignoring batch_size in sc.external.pp.scanorama_integrate (scverse#2374)

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  Wainberg

  authored
  d7dbbd5

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• Fixing mnn (scverse#2407)

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  smautner

  authored
  b62891e

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• fix scrublet (scverse#2395)

  adamgayoso

  authored
  316b90c

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• Fix some typos (scverse#2405)

  yuanx749

  authored
  c3d791a

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• Update external page (scverse#2400)

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  ivirshup

  authored
  de05de6

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• Spell out flavors in HVG, add scikit-misc requirement to docs (scverse#2379)

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  mxposed

  and

  Zethson

  authored
  b8277aa

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Commits on Jan 17, 2023

• Add bento to ecosystem (scverse#2334)

  ckmah

  authored
  d26be44

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Commits on Nov 3, 2022

• [pre-commit.ci] pre-commit autoupdate (scverse#2347)

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  pre-commit-ci[bot]

  authored
  d7e1302

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Commits on Oct 11, 2022

• Pin matplotlib for doc builds (scverse#2349)

  ivirshup

  authored
  e5cdbbc

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Commits on Oct 10, 2022

• Handle scalar datasets too (scverse#2344)

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  gokceneraslan

  authored
  3b2fd00

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