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A public repository for collective curation of antimicrobial resistance (AMR) genes and mutations. Submit, discuss, and resolve AMR curation issues.
GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.
A bioinformatic toolkit to align genome assemblies into pangenome graphs
Read Until client library for Nanopore Sequencing
Code for Shiny app for Empiric Prescribing recommendations
a long read simulator that can imitate many types of read problems
Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on homology and SNP models.
CLI tool for flexible and fast adaptive sampling on ONT sequencers
Data on COVID-19 (coronavirus) cases, deaths, hospitalizations, tests • All countries • Updated daily by Our World in Data
A simple, extensible Markov chain generator.
The Library of Statistical Techniques: Instructions for Performing Statistics THIS REPO IS MOVING TO https://github.com/LOST-STATS/LOST-STATS.github.io
Extensible full DAG streaming computation server with services and jobs for RNA-Seq, Tn-Seq, WG-Seq and Term-Seq.
Use deep learning to generate and harmonize music in the style of Bach
An implementation of the Grammar of Graphics in R
120+ interactive Python coding interview challenges (algorithms and data structures). Includes Anki flashcards.
American Gut open-access data and IPython notebooks
Official QIIME 1 software repository. QIIME 2 (https://qiime2.org) has succeeded QIIME 1 as of January 2018.
This is a dataset of the all-time top 1,000 posts, from the top 2,500 subreddits by subscribers, pulled from reddit between August 15–20, 2013.
Data and code behind the articles and graphics at FiveThirtyEight