duopeng
Follow
Stars
Tools for handling Unique Molecular Identifiers in NGS data sets
machine-readable file format for genomic library sequence and structure
computer vision models for single-cell phenotyping
Calculate the outcome genotype frequencies in CRISPR genome editing experiments using deep sequencing reads.
Repository for StripedHyena, a state-of-the-art beyond Transformer architecture
Official codebase for I-JEPA, the Image-based Joint-Embedding Predictive Architecture. First outlined in the CVPR paper, "Self-supervised learning from images with a joint-embedding predictive arch…
AI agents + toolkits for scientific knowledge
Coarse-graining of large single-cell RNA-seq data into metacells
Predict Cas13a guides for Influenza detection.
Jupyter notebooks for analysis and figures related to the native organelle IP paper
Automated primer design for genotyping CRISPR edited cells
Extract splice junction sequences and make base-frequency plots
A tutorial for pathway visualization using tidyverse, igraph, and ggraph
Images and other data from the JUMP Cell Painting Consortium
CLEAR: Self-supervised contrastive learning for integrative single-cell RNA-seq data analysis
A GIS tool and demo dataset for analyzing location‐based social media activities
R Shiny tool to interactively visualize and analyze antibody repertoires
Self-supervised models for encoding protein localization patterns from microscopy images
An open access book on scientific visualization using python and matplotlib