Merge pull request DerrickWood#37 from blankenberg/classify-flush

Flush output files in classify.
edelpuech · Mar 3, 2016 · 1e0b9a1 · 1e0b9a1
2 parents 5cc8d1a + cacf33d
commit 1e0b9a1
Showing 1 changed file with 6 additions and 0 deletions.
diff --git a/src/classify.cpp b/src/classify.cpp
@@ -200,6 +200,12 @@ void process_file(char *filename) {
   }  // end parallel section
 
   delete reader;
+  if (Print_kraken)
+    (*Kraken_output) << std::flush;
+  if (Print_classified)
+    (*Classified_output) << std::flush;
+  if (Print_unclassified)
+    (*Unclassified_output) << std::flush;
 }
 
 void classify_sequence(DNASequence &dna, ostringstream &koss,