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Weizmann Institute of Science
- Rehovot, Israel
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component-contribution-feedstock Public
Forked from conda-forge/component-contribution-feedstockA conda-smithy repository for component-contribution.
BSD 3-Clause "New" or "Revised" License UpdatedSep 6, 2024 -
SBtab Public
Forked from tlubitz/SBtabSBtab - Table format for Systems Biology:
Python MIT License UpdatedNov 20, 2023 -
pkasolver Public
Forked from mayrf/pkasolvertoolkit for prediction pKa values of small molecules via graph convolutional networks
Jupyter Notebook MIT License UpdatedJan 15, 2023 -
milo-lab Public
Automatically exported from code.google.com/p/milo-lab
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metabolic_modelling Public
Forked from marco-corrao/metabolic_modelling -
staged-recipes Public
Forked from conda-forge/staged-recipesA place to submit conda recipes before they become fully fledged conda-forge feedstocks
Python BSD 3-Clause "New" or "Revised" License UpdatedNov 20, 2020 -
optlang Public
Forked from cdiener/optlangoptlang - sympy based mathematical programming language
Python Apache License 2.0 UpdatedJun 17, 2020 -
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PMFA Public
Forked from aalto-ics-kepaco/PMFAPrincipal Metabolic Flux Mode Analysis
MATLAB UpdatedJul 18, 2019 -
component-contribution Public archive
Standard reaction Gibbs energy estimation for biochemical reactions
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enzyme-cost Public archive
Kinetic modeling of pathway fluxes for estimating the specific cost in enzymes for sustaining a given flux
Python UpdatedOct 11, 2018 -
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equilibrator-kbase Public
A KBase module for the Component Contribution method (AKA eQuilibrator)
Python MIT License UpdatedJul 12, 2018 -
equilibrator-api Public archive
A command-line version of eQuilibrator with minimal dependencies
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stFBA Public archive
Implementation of the st-FBA algorithm, dependent on COBRApy
TeX MIT License UpdatedJun 9, 2018 -
sloppy Public
A cobrapy-based library that finds knockout and carbon-source combinations that enforce flux-biomass coupling
Python MIT License UpdatedJun 9, 2018 -
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ms-tools Public archive
A collection of scripts for analyzing MS data
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sysbio2018 Public archive
Scripts for the blackboard session in the SysBio 2018 conference in Innsbruck
TeX MIT License UpdatedMar 3, 2018 -
pulsefeeding-analysis Public
Forked from karsekar/pulsefeeding-analysisMATLAB and Python code used for analysis and figure generation of E. coli pulsing/starvation project
Jupyter Notebook UpdatedFeb 5, 2018 -
flux-html-report Public
A python script that creates an HTML output file for FBA results
HTML MIT License UpdatedJan 31, 2018 -
sysbio2016 Public archive
Proceedings and examples accompanying the Systems Biology Course in Innsbruck, February 2016
Jupyter Notebook MIT License UpdatedNov 23, 2017 -
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flux-enzyme-cost-minimization Public archive
Forked from liebermeister/enzyme-flux-cost-minimizationExplore optimal metabolic states by screening of metabolic flux distributions and computing their enzyme cost via kinetic models
Python GNU General Public License v2.0 UpdatedOct 3, 2017 -
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carbofix Public
A algorithm for automatic design of carbon fixation cycles
Python MIT License UpdatedNov 22, 2016 -
replace-animals Public
A collaborative effort to investigate the advantage of replacing an animal-based diet with a plant-based one
Python MIT License UpdatedSep 14, 2015