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  • Weizmann Institute of Science
  • Rehovot, Israel

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  • FastKnock Public

    Forked from leilahsn/FastKnock
    Python Updated Oct 28, 2024
  • A conda-smithy repository for component-contribution.

    BSD 3-Clause "New" or "Revised" License Updated Sep 6, 2024
  • SBtab Public

    Forked from tlubitz/SBtab

    SBtab - Table format for Systems Biology:

    Python MIT License Updated Nov 20, 2023
  • pkasolver Public

    Forked from mayrf/pkasolver

    toolkit for prediction pKa values of small molecules via graph convolutional networks

    Jupyter Notebook MIT License Updated Jan 15, 2023
  • milo-lab Public

    Automatically exported from code.google.com/p/milo-lab

    Python 2 3 Updated Oct 13, 2022
  • Python 1 Updated Mar 8, 2021
  • A place to submit conda recipes before they become fully fledged conda-forge feedstocks

    Python BSD 3-Clause "New" or "Revised" License Updated Nov 20, 2020
  • optlang Public

    Forked from cdiener/optlang

    optlang - sympy based mathematical programming language

    Python Apache License 2.0 Updated Jun 17, 2020
  • TeX Updated Dec 3, 2019
  • TeX Updated Nov 29, 2019
  • PMFA Public

    Forked from aalto-ics-kepaco/PMFA

    Principal Metabolic Flux Mode Analysis

    MATLAB Updated Jul 18, 2019
  • component-contribution Public archive

    Standard reaction Gibbs energy estimation for biochemical reactions

    Python 17 15 Other Updated Dec 10, 2018
  • enzyme-cost Public archive

    Kinetic modeling of pathway fluxes for estimating the specific cost in enzymes for sustaining a given flux

    Python Updated Oct 11, 2018
  • TeX Updated Sep 20, 2018
  • examples Public

    Forked from quiltdata/examples
    Jupyter Notebook Updated Jul 31, 2018
  • A KBase module for the Component Contribution method (AKA eQuilibrator)

    Python MIT License Updated Jul 12, 2018
  • equilibrator-api Public archive

    A command-line version of eQuilibrator with minimal dependencies

    Python 1 2 MIT License Updated Jun 15, 2018
  • stFBA Public archive

    Implementation of the st-FBA algorithm, dependent on COBRApy

    TeX MIT License Updated Jun 9, 2018
  • sloppy Public

    A cobrapy-based library that finds knockout and carbon-source combinations that enforce flux-biomass coupling

    Python MIT License Updated Jun 9, 2018
  • equilibrator Public archive

    JavaScript 10 5 MIT License Updated Jun 8, 2018
  • ms-tools Public archive

    A collection of scripts for analyzing MS data

    Python 2 1 MIT License Updated Apr 19, 2018
  • sysbio2018 Public archive

    Scripts for the blackboard session in the SysBio 2018 conference in Innsbruck

    TeX MIT License Updated Mar 3, 2018
  • MATLAB and Python code used for analysis and figure generation of E. coli pulsing/starvation project

    Jupyter Notebook Updated Feb 5, 2018
  • A python script that creates an HTML output file for FBA results

    HTML MIT License Updated Jan 31, 2018
  • sysbio2016 Public archive

    Proceedings and examples accompanying the Systems Biology Course in Innsbruck, February 2016

    Jupyter Notebook MIT License Updated Nov 23, 2017
  • HTML 5 1 MIT License Updated Nov 1, 2017
  • Explore optimal metabolic states by screening of metabolic flux distributions and computing their enzyme cost via kinetic models

    Python GNU General Public License v2.0 Updated Oct 3, 2017
  • kvivo_max Public

    Forked from dandanvidi/kvivo_max
    Python MIT License Updated Nov 27, 2016
  • carbofix Public

    A algorithm for automatic design of carbon fixation cycles

    Python MIT License Updated Nov 22, 2016
  • A collaborative effort to investigate the advantage of replacing an animal-based diet with a plant-based one

    Python MIT License Updated Sep 14, 2015