Dw/split run (qodo-ai#233)

* split run method into init and run_test_gen methods

* update version

fix: Running get_coverage() and rebuilding prompt. (qodo-ai#232)

* Running get_coverage() and rebuilding prompt.

* Incrementing version.

Generate new tests that are focused on the pr changeset (qodo-ai#211)

* Initial commit of Diff Cover feature.

* Updating poetry lock file and incrementing version.

* Update cover_agent/CoverAgent.py

Co-authored-by: codiumai-pr-agent-pro[bot] <151058649+codiumai-pr-agent-pro[bot]@users.noreply.github.com>

* Fixed typo.

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Co-authored-by: codiumai-pr-agent-pro[bot] <151058649+codiumai-pr-agent-pro[bot]@users.noreply.github.com>

Adding conf. (qodo-ai#207)

Fixed missing TOML. (qodo-ai#205)

Auto scan entire repo ! (qodo-ai#202)

* scan entire repo

* fix tests

* increased coverage

* Added tree_sitter as hidden import.

* Incrementing verison

* dw/debug scan (qodo-ai#203)

* scan works on python fastapi test repo

* keep original entrypoint

* algo cleaning and improvements

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Co-authored-by: Embedded DevOps <[email protected]>
Co-authored-by: David Wurtz <[email protected]>

Fixed prompt instructions for class delimiter insertions. (qodo-ai#182)

Adding support for `o1-preview` (qodo-ai#166)

* Updated non-streaming support and added test.

* Added tests using o1-preview. Wow!

* Increased code coverage with o1-preview and updated final code.

* Incrementing version.

* Increased coverage and updated o1 calls.

* Merged system prompt instead of popping.

#### New Features and Enhancements (qodo-ai#168)

* Enhanced Database Usage: Introduced a new database_usage.md document outlining the expanded capabilities of logging test results to a structured database.
* Comprehensive System Diagrams: Added a top_level_sequence_diagram.md, providing a clear visual overview of CoverAgent's processes and workflows.
* Docker and Multi-Language Support: Several new Docker configurations and templated tests were introduced for various programming languages, including C#, TypeScript, C, and React, ensuring streamlined testing environments across multiple platforms.
* UnitTestDB Integration: The UnitTestDB.py file was added to support robust logging of test generation attempts, improving error tracking and debugging.

#### Refinements and Modifications
* Coverage Processing: Key improvements to CoverageProcessor.py modularized coverage parsing and expanded support for different coverage report formats (LCOV, Cobertura, Jacoco).
* PromptBuilder Enhancements: New CLI arguments were introduced, including options for running tests multiple times (--run-tests-multiple-times) and a report coverage feature flag for more granular control over coverage behavior.
* CI/CD Pipeline Improvements: Several GitHub workflows were modified to improve pipeline efficiency, including nightly regression tests and templated test publishing pipelines.

#### Improved Documentation
* Detailed Usage Examples: The usage_examples.md file was updated to provide more comprehensive guidance on how to effectively use CoverAgent's features, ensuring that developers can quickly get up to speed with the latest updates.
* Configuration and Template Updates: Configuration files, such as test_generation_prompt.toml, were refined to better support the test framework and eliminate redundant instructions.

160 added test framework and proper error messaging in prompt (qodo-a…

…i#165)

* Added testing framework to prompt.

* Cleaned up code and added TO DO.

* Added prompt template for failure analysis.

* Added failed test summary from LLM.

* Fixed parenthesis.

* Added TOML to Makefile.