Integrative analysis of transcriptomics and genomics data of bladder cancer to predict potential drug targets
#project: TCGA-BLCA
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Input:
- 1)RNA-seq(HTSeq - Counts) -txt
- 2)miRNA-seq(BCGSC miRNA Profiling) isofroms excluded -txt
- 3)WXS(VarScan2 Variant Aggregation and Masking) single nucleotide variation -MAF
- 4)DEGs & DEMs Targeted Genes
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Check the SNPs and get the variants.
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Check Drug Data Bank
id filename md5 size state
0e239d8f-47b0-4e47-9716-e9ecc87605b9 TCGA.BLCA.mutect.0e239d8f-47b0-4e47-9716-e9ecc87605b9.DR-10.0.somatic.maf.gz d872d906b62c6617c0afa4e32dcbe32d 34215484 validated
17350cc9-f9ae-48c2-8663-25d794e873d1 TCGA.BLCA.somaticsniper.17350cc9-f9ae-48c2-8663-25d794e873d1.DR-10.0.somatic.maf.gz fb3827b69cd2dc15a88949770e8f09e3 23606229 validated
4a755399-e5b5-4d0e-b1e3-dae24b81590e TCGA.BLCA.varscan.4a755399-e5b5-4d0e-b1e3-dae24b81590e.DR-10.0.somatic.maf.gz 0e59936e32b1f5ec916b20d153acd449 29621334 validated
7ed5eb26-d52c-45c5-bfa1-e39f963007a8 TCGA.BLCA.muse.7ed5eb26-d52c-45c5-bfa1-e39f963007a8.DR-10.0.somatic.maf.gz 9a9d2faa245cd5c0d57511b2325958c6 29745431 validated