Fixed "usage" issue from trinker#9 . Also removed useless @alias tags

R/p_author.R

@@ -2,7 +2,6 @@
 #' 
 #' Returns the author of a package
 #' 
-#' @aliases p_author
 #' @param package Name of the package you want the author of.
 #' @seealso \code{\link[utils]{packageDescription}}
 #' @keywords author package

R/p_citation.R

@@ -2,7 +2,7 @@
 #' 
 #' Generate citation for a package
 #' 
-#' @aliases p_citation p_cite
+#' @rdname p_citation
 #' @param package Name of the package you want a citation for
 #' @seealso \code{\link[utils]{citation}}
 #' @keywords citation cite
@@ -23,5 +23,6 @@ function(package = "r") {
     citation(package = x, lib.loc = NULL, auto = NULL)
 }
 
+#' @rdname p_citation
 #' @export
 p_cite <- p_citation

R/p_cran.R

@@ -2,7 +2,6 @@
 #' 
 #' Generate a vector of all available packages.
 #' 
-#' @aliases p_cran
 #' @param menu logical.  If TRUE allows user to select 
 #' the package and return that package name
 #' @seealso \code{\link[utils]{available.packages}}

R/p_data.R

@@ -2,7 +2,6 @@
 #' 
 #' Generate a script of all data sets contained in package.
 #' 
-#' @aliases p_data
 #' @param package name of package (default is the base install datasets package)
 #' @seealso \code{\link[utils]{data}}
 #' @keywords data package

R/p_delete.R

@@ -2,7 +2,7 @@
 #' 
 #' Remove package(s) from the library permanently.  
 #' 
-#' @aliases p_delete p_del
+#' @rdname p_delete
 #' @param \ldots name(s) of package(s)
 #' @section Warning:
 #' 
@@ -55,5 +55,6 @@ function (...)
     }
 }
 
+#' @rdname p_delete
 #' @export
 p_del <- p_delete

R/p_exists.R

@@ -2,7 +2,6 @@
 #' 
 #' Checks CRAN to determine if a package exists
 #' 
-#' @aliases p_exists
 #' @param package name of package
 #' @param cran logical.  If TRUE checks CRAN for the package; 
 #' if FALSE checks the user's local library

R/p_functions.R

@@ -2,7 +2,7 @@
 #' 
 #' List the functions from a package
 #' 
-#' @aliases p_functions p_funs
+#' @rdname p_functions
 #' @param package Name of the package you want the list of functions for.
 #' @param load logical.  If TRUE the package will be loaded.
 #' @keywords function package
@@ -36,5 +36,6 @@ function (package = NULL, load = FALSE)
     return(a)
 }
 
+#' @rdname p_functions
 #' @export
 p_funs <- p_functions

R/p_getXML.R

@@ -10,7 +10,6 @@
 #' Choosing not to download will result in a warning 
 #' message (and likely will result in an error).
 #' 
-#' @aliases p_getXML
 #' @param package Provides the name of XML to the warning
 #' @param fun Provides the name of the function getXML is being used in to the warning
 #' @keywords XML

R/p_help.R

@@ -2,7 +2,6 @@
 #'
 #' Generate an html, web or pdf of a package's help manual
 #' 
-#' @aliases p_help
 #' @param package name of package
 #' @param web logical.  If TRUE grabs current help manual from the web
 #' @param pdf logical.  If TRUE uses a LaTeX compiler to generate a pdf

R/p_information.R

@@ -5,7 +5,7 @@
 #' version, author, maintainer, description, depends, 
 #' imports, suggests
 #' 
-#' @aliases p_information p_info
+#' @rdname p_information
 #' @param package Name of the package you want information on.
 #' The default is "base".
 #' @keywords packageDescription info information package
@@ -24,5 +24,6 @@ function(package = "base") {
     packageDescription(x)
 }
 
+#' @rdname p_information
 #' @export
 p_info <- p_information

R/p_install.R

@@ -2,7 +2,7 @@
 #' 
 #' Installs a package provided the package is a CRAN package
 #' 
-#' @aliases p_install p_get
+#' @rdname p_install
 #' @param package Name of package(s)
 #' @keywords install package
 #' @seealso \code{\link[utils]{install.packages}}
@@ -16,5 +16,6 @@ function(package){
     do.call('library', list(pack))
 }
 
+#' @rdname p_install
 #' @export
 p_get <- p_install

R/p_interactive.R

@@ -4,7 +4,7 @@
 #' at functions and optionally attaching the package 
 #' and looking at the help page.
 #' 
-#' @aliases p_interactive p_inter
+#' @rdname p_interactive
 #' @keywords package
 #' @export
 #' @examples
@@ -36,5 +36,6 @@ function() {
     cat("Thank you for using the p_interactive function!\n\n")
 }
 
+#' @rdname p_interactive
 #' @export
 p_inter <- p_interactive

R/p_library.R

@@ -3,7 +3,7 @@
 #' Generates a vector of all available add on packages 
 #' in the user's library and optionally opens that directory.
 #' 
-#' @aliases p_library p_lib
+#' @rdname p_library
 #' @param open logical. If TRUE opens the directory of 
 #' the add on packages library.
 #' @keywords library package
@@ -33,5 +33,6 @@ function (open = FALSE)
     return(y)
 }
 
+#' @rdname p_library
 #' @export
 p_lib <- p_library

R/p_load.R

@@ -4,7 +4,6 @@
 #' It checks to see if a package is installed, if not 
 #' it installs the package(s) and loads it.
 #' 
-#' @aliases p_load
 #' @param \ldots name(s) of package(s)
 #' @param install logical.  If TRUE will attempt to install a package 
 #' not found in the library

R/p_loaded.R

@@ -2,7 +2,6 @@
 #'
 #' Output is a character string of loaded packages
 #' 
-#' @aliases p_loaded
 #' @param all logical.  If TRUE will show all packages 
 #' including base install; FALSE will show all packages
 #'  excluding base install packages that install when R loads

R/p_news.R

@@ -2,7 +2,6 @@
 #'
 #' Find out news on a package
 #' 
-#' @aliases p_news
 #' @param package Name of package (default is to see news for R)
 #' @seealso \code{\link[utils]{news}}
 #' @keywords news packages

R/p_path.R

@@ -2,7 +2,6 @@
 #' 
 #' See path to library of add on package
 #' 
-#' @aliases p_path
 #' @seealso \code{\link[base]{.libPaths}}
 #' @keywords package library location path
 #' @export

R/p_search_any.R

@@ -4,7 +4,7 @@
 #' Uses agrep to find packages by 
 #' maintainer (often this is the author as well) or by name
 #' 
-#' @aliases p_search_any p_sa
+#' @rdname p_search_any
 #' @param term A search character string
 #' @param search.by The variable to search by (takes 
 #' a integer or a character string): 1-"Maintainer", 
@@ -62,5 +62,6 @@ function (term, search.by = "Maintainer")
     }
 }
 
+#' @rdname p_search_any
 #' @export
 p_sa <- p_search_any

R/p_search_library.R

@@ -6,7 +6,7 @@
 #' Useful for those times when you can't remember 
 #' that package name but you know ``it starts with...''
 #' 
-#' @aliases p_search_library p_sl
+#' @rdname p_search_library
 #' @param begins.with a character string to search for 
 #' packages starting with the letter(s)
 #' @param contains a character string to search for 
@@ -46,5 +46,6 @@ function(begins.with = NULL, contains = NULL){
     cat(x, "loaded\n")
 }
 
+#' @rdname p_search_library
 #' @export
 p_sl <- p_search_library

R/p_unload.R

@@ -2,7 +2,6 @@
 #' 
 #' Unloads package(s) or all packages
 #' 
-#' @aliases p_unload
 #' @param \dots name of package(s) or "all" 
 #' (all removes all add on packages)
 #' @param negate logical. If TRUE will uninstall 

R/p_update.R

@@ -3,7 +3,7 @@
 #' Either view out of date packages or update 
 #' out of data packages
 #' 
-#' @aliases p_update p_up
+#' @rdname p_update
 #' @param install logical.  If TRUE installs 
 #' any out of date packages; if FALSE retuns a list 
 #' of out of date packages
@@ -38,5 +38,6 @@ function (install = TRUE) {
      }
 }
 
+#' @rdname p_update
 #' @export
 p_up <- p_update

R/p_version.R

@@ -2,7 +2,7 @@
 #' 
 #' Determine what version a package is in your library
 #' 
-#' @aliases p_version p_ver
+#' @rdname p_version
 #' @param package name of package (default returns R version)
 #' @seealso  \code{\link[utils]{packageDescription}}
 #' @keywords package version
@@ -21,5 +21,6 @@ function(package="R") {
     }
 }
 
+#' @rdname p_version
 #' @export
 p_ver <- p_version

R/p_vignette.R

@@ -3,7 +3,7 @@
 #' Use default "all" to see which packages have vignettes 
 #' and supply a package name to view that vignette.
 #' 
-#' @aliases p_vignette p_vign
+#' @rdname p_vignette
 #' @param package name of package or "all" (if all returns
 #' all packages from the user's library that have vignettes)
 #' @seealso  \code{\link[utils]{vignette}}
@@ -63,5 +63,6 @@ function(package = "all"){
                    " or a the name of a package that has a vignette"))
 }
 
+#' @rdname p_vignette
 #' @export
 p_vign <- p_vignette

man/p_citation.Rd

@@ -4,6 +4,8 @@
 \title{Generate citation for a package}
 \usage{
   p_citation(package = "r")
+
+  p_cite(package = "r")
 }
 \arguments{
   \item{package}{Name of the package you want a citation

man/p_delete.Rd

@@ -4,6 +4,8 @@
 \title{Remove package(s) from the library}
 \usage{
   p_delete(...)
+
+  p_del(...)
 }
 \arguments{
   \item{\ldots}{name(s) of package(s)}

man/p_functions.Rd

@@ -4,6 +4,8 @@
 \title{List the functions from a package}
 \usage{
   p_functions(package = NULL, load = FALSE)
+
+  p_funs(package = NULL, load = FALSE)
 }
 \arguments{
   \item{package}{Name of the package you want the list of

man/p_information.Rd

@@ -4,6 +4,8 @@
 \title{See information on a package.}
 \usage{
   p_information(package = "base")
+
+  p_info(package = "base")
 }
 \arguments{
   \item{package}{Name of the package you want information

man/p_install.Rd

@@ -4,6 +4,8 @@
 \title{Installs and loads a package provided the package is a CRAN package}
 \usage{
   p_install(package)
+
+  p_get(package)
 }
 \arguments{
   \item{package}{Name of package(s)}

man/p_interactive.Rd

@@ -4,6 +4,8 @@
 \title{Interactive package exploration}
 \usage{
   p_interactive()
+
+  p_inter()
 }
 \description{
   Interactively search through packages, looking at

man/p_library.Rd

@@ -4,6 +4,8 @@
 \title{Display library packages}
 \usage{
   p_library(open = FALSE)
+
+  p_lib(open = FALSE)
 }
 \arguments{
   \item{open}{logical. If TRUE opens the directory of the

man/p_search_any.Rd

@@ -5,6 +5,8 @@
 by similar package names}
 \usage{
   p_search_any(term, search.by = "Maintainer")
+
+  p_sa(term, search.by = "Maintainer")
 }
 \arguments{
   \item{term}{A search character string}

man/p_search_library.Rd

@@ -4,6 +4,8 @@
 \title{Search library packages using partial matching}
 \usage{
   p_search_library(begins.with = NULL, contains = NULL)
+
+  p_sl(begins.with = NULL, contains = NULL)
 }
 \arguments{
   \item{begins.with}{a character string to search for

man/p_update.Rd

@@ -4,6 +4,8 @@
 \title{Update out of date packages}
 \usage{
   p_update(install = TRUE)
+
+  p_up(install = TRUE)
 }
 \arguments{
   \item{install}{logical.  If TRUE installs any out of date

man/p_version.Rd

@@ -4,6 +4,8 @@
 \title{Determine installed package version}
 \usage{
   p_version(package = "R")
+
+  p_ver(package = "R")
 }
 \arguments{
   \item{package}{name of package (default returns R

man/p_vignette.Rd

@@ -4,6 +4,8 @@
 \title{Look at a package's vignette}
 \usage{
   p_vignette(package = "all")
+
+  p_vign(package = "all")
 }
 \arguments{
   \item{package}{name of package or "all" (if all returns