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A Java API for high-throughput sequencing data (HTS) formats.

samtools.github.io/htsjdk/

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Name		Name	Last commit message	Last commit date
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etc/test		etc/test
lib		lib
src		src
testdata		testdata
.classpath		.classpath
.gitignore		.gitignore
.project		.project
README.md		README.md
build.xml		build.xml
htsjdk.iml		htsjdk.iml
htsjdk.ipr		htsjdk.ipr

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A Java API for high-throughput sequencing data (HTS) formats.

HTSJDK is an implementation of a unified Java library for accessing common file formats, such as SAM and VCF, used for high-throughput sequencing data. There are also an number of useful utilities for manipulating HTS data.