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bariskalem

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Commits on Feb 6, 2024

• Format report text / Implement function for gene symbol retrieval / Code cleanup

  bariskalem

  committed
  ab4e4d2

Commits on Jan 17, 2024

• Fix typo of probesMMBC in rnb.get.snp.matrix()

  bariskalem

  committed
  9b32f6c

Commits on Jan 15, 2024

• Minor reference fix

  bariskalem

  committed
  d72fca5

Commits on Jan 14, 2024

• Add a reference about nv probes for the report

  bariskalem

  committed
  e0c6999

• Fix SNPs anno column names

  bariskalem

  committed
  40b2a53

• Improve nv probes exploratory section

  bariskalem

  committed
  87ca26b

Commits on Jan 10, 2024

• Improve nv-probe related sections. / Minor fixes

  bariskalem

  committed
  403495a

Commits on Jan 9, 2024

• Implemented: Generate differential methylation table for only nv-probes in EPICv2

  bariskalem

  committed
  9373b61

Commits on Jan 8, 2024

• Improve variable name

  bariskalem

  committed
  51abfa3

• Implement EPICv2 combine array with previous arrays / One sample fix

  bariskalem

  committed
  5306563

Commits on Jan 4, 2024

• Code cleanup

  bariskalem

  committed
  f054fce

• Code cleanup

  bariskalem

  committed
  d6bd692

• Merge branch 'improve/SNPs_filtering'

  bariskalem

  committed
  c5a07e5

• Improve snp filtering for hg38 annotation package

  bariskalem

  committed
  32897c6

Commits on Dec 28, 2023

• Improve assembly selection for EPICv1 and 450K platforms / Address bugs

  bariskalem

  committed
  8ee0054

Commits on Dec 7, 2023

• Improve logic for genome specific annotation

  bariskalem

  committed
  eeaccab

• Use SNPs MAF column in probesEPICv2 annotation to filter bad probes

  bariskalem

  committed
  b867621

Commits on Nov 29, 2023

• Update RnBeadRawSet-class.R

  Show description for 8891b3d
  bariskalem

  authored
  8891b3d

• Update .gitignore

  bariskalem

  authored
  eed0360

Commits on Oct 5, 2023

• Add TODO markers for EPICv1 hg38 compatibility / Fix syntax for MMBC control probe annotation

  bariskalem

  committed
  e1e7ff8

• Add a new section under the 'Data Import/Loading' part of the report to indicate the illumina platform

  bariskalem

  committed
  2fb9ef9

• Add GEO platform ID of EPICv2 / Improve comments

  bariskalem

  committed
  ffa445e

• Improve comments for EPIC v2 implementation

  bariskalem

  committed
  567b897

• Improve comments / Uncomment an if-block

  bariskalem

  committed
  99e35a5

• Improve TODO comments

  bariskalem

  committed
  0e998ff

• Fix get.annotation function for EPIC v2 / Clean code

  bariskalem

  committed
  572359f

• Make the probe type pattern matching compatible for EPIC v2

  bariskalem

  committed
  ae92403

Commits on Oct 4, 2023

• EPIC v2 update initial commit

  bariskalem

  committed
  cb9cf3c