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35 followers · 2 following
  • The McDonnell Genome Institute at Washington University
  • Saint Louis, MO

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Achievement: Arctic Code Vault ContributorAchievement: Pull Sharkx3

Achievements

Achievement: Arctic Code Vault ContributorAchievement: Pull Sharkx3

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  • diagdupfile Public

    incomplete python scripts for plotting diagnose_dups output

    Python Updated Dec 20, 2018

  • laims Public

    Python 4 Updated Dec 18, 2018

  • docker_smoove_source_build Public

    A dockerfile for building a specific commit of smoove from source

    Dockerfile Updated Dec 13, 2018

  • cn_region_wdl Public

    WDL Updated Nov 30, 2018

  • lumpy-sv Public

    Forked from arq5x/lumpy-sv

    lumpy: a general probabilistic framework for structural variant discovery

    C MIT License Updated Nov 26, 2018

  • svtools Public

    Forked from hall-lab/svtools

    Tools for processing and analyzing structural variants.

    Python 1 MIT License Updated Nov 19, 2018

  • smoove Public

    Forked from brentp/smoove

    structural variant calling and genotyping with existing tools, but, smoothly.

    Go Apache License 2.0 Updated Nov 16, 2018

  • bootstrap Public

    Vim Script Updated Nov 11, 2018

  • golang-dev Public

    Updated Nov 8, 2018

  • docker_tutorial Public

    Notes and dockerfiles from Bioinformatics workshop on 11/2/2018

    Dockerfile Updated Nov 2, 2018

  • bioconda-recipes Public

    Forked from bioconda/bioconda-recipes

    Conda recipes for the bioconda channel.

    Shell Updated Oct 3, 2018

  • ccdg-recipes Public

    Forked from indraniel/ccdg-recipes

    A collection of debian package creation recipes for the CCDG pipeline

    Makefile ISC License Updated Sep 23, 2018

  • firecloud-tools Public

    Forked from broadinstitute/firecloud-tools

    Tools for use with FireCloud

    Python BSD 3-Clause "New" or "Revised" License Updated Sep 17, 2018

  • cyvcf2 Public

    Forked from brentp/cyvcf2

    cython + htslib == fast VCF parsing

    C MIT License Updated Aug 22, 2018

  • python-dev Public

    Updated Aug 22, 2018

  • regenotype Public

    regenotype duplications using different priors

    Python Updated Aug 17, 2018

  • cromwell_cost Public

    estimate cost of cromwell workflow on Google

    Python 1 1 MIT License Updated Jun 21, 2018

  • cromwell_monitor Public

    Shell 1 Updated Jun 4, 2018

  • samtools Public

    Forked from samtools/samtools

    This is the official development repository for samtools.

    C 1 MIT License Updated Apr 13, 2018

  • oneoffs Public

    Crummy scripts that may never be used again or may be gold! At least they're in version control.

    Perl MIT License Updated Feb 21, 2018

  • hts-nim Public

    Forked from brentp/hts-nim

    nim wrapper for htslib for parsing genomics data files

    Nim MIT License Updated Feb 14, 2018

  • headered_split Public

    Python 1 MIT License Updated Jan 24, 2018

  • diagnose_dups Public

    A tool to examine duplicate read characteristics in a BAM file

    C++ 12 4 MIT License Updated Dec 8, 2017

  • crimson Public

    Forked from bow/crimson

    Bioinformatics tool outputs converter to JSON or YAML

    Python 1 BSD 3-Clause "New" or "Revised" License Updated Oct 31, 2017

  • yaps2 Public

    Forked from indraniel/yaps2

    Yet Another Pipeline System 2 (YAPS2)

    Python BSD 2-Clause "Simplified" License Updated Sep 22, 2017

  • refilter Public

    Python MIT License Updated Sep 18, 2017

  • long-read-validation Public

    Forked from hall-lab/long-read-validation

    Long-read validation of BEDPE structural variation

    Python Updated Sep 7, 2017

  • cromwell_helper_scripts Public

    Shell Updated Aug 28, 2017

  • svtyper Public

    Forked from hall-lab/svtyper

    Bayesian genotyper for structural variants

    Python MIT License Updated Jul 28, 2017

  • docker-parrot Public

    Updated May 12, 2017