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Python module to analyse skeleton (thin object) images

Python 120 40 Updated Dec 13, 2024

A Fiji plugin for Curvature Analysis.

Jupyter Notebook 13 4 Updated Aug 17, 2020

ImageJS--Image analysis in the browser with ImageJ

JavaScript 90 7 Updated Apr 11, 2024

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

JavaScript 12,870 44,798 Updated Dec 30, 2024

A collection of demonstration materials for MorphoLibJ.

12 7 Updated Jan 12, 2023

Collection of mathematical morphology methods and plugins for ImageJ

Java 101 48 Updated Jan 3, 2025

Model repository for bioimage.io

16 9 Updated Aug 7, 2023

Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals incl. humans

Python 4,765 1,671 Updated Dec 23, 2024

Lilian's Blog

SCSS 516 135 Updated Sep 1, 2023

Image quality is an open source software library for Image Quality Assessment (IQA).

Python 405 86 Updated Feb 5, 2024

Generate markdown notebooks from ImageJ Macro

Java 23 2 Updated Mar 17, 2021

Image restoration for fluorescence microscopy

Python 289 82 Updated Oct 5, 2024

Materials for second semester exams

Mathematica 5 1 Updated Jun 21, 2020

Simple Maven project for an ImageJ2 command

Java 30 16 Updated Apr 11, 2022

unet for image segmentation

Jupyter Notebook 96 56 Updated Jul 12, 2018

🔬🍸 Home of the ImageJ BAR: A collection of Broadly Applicable Routines for ImageJ

Java 24 18 Updated Jun 3, 2022

pytorch handbook是一本开源的书籍,目标是帮助那些希望和使用PyTorch进行深度学习开发和研究的朋友快速入门,其中包含的Pytorch教程全部通过测试保证可以成功运行

Jupyter Notebook 20,503 5,409 Updated Jul 25, 2024

a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

Jupyter Notebook 1,435 413 Updated Nov 21, 2024

matlab script for pia vessel dilation analysis

MATLAB 2 1 Updated Dec 3, 2019

scripts for tracking diving arteriole diameters

MATLAB 3 1 Updated Dec 3, 2019

Deeplearning Algorithms Tutorial

827 193 Updated Apr 28, 2024

The ImageJ plugin to run deep-learning models

Java 86 12 Updated Jan 3, 2025
Python 14 5 Updated Sep 29, 2020

R package implementing the NBLAST neuron search algorithm, as an add-on for the NeuroAnatomy Toolbox (nat) R package.

R 17 6 Updated Aug 31, 2024

handwriting number recognition on ImageJ

Python 4 Updated Dec 6, 2020

Online documentation and reference for CLIJ

ImageJ Macro 28 7 Updated May 21, 2021
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