mosaics

This repo was built to identify putative post-zygotic mutations (PZMs) using Mutect2 results as input data.

Name		Name	Last commit message	Last commit date
Latest commit History 69 Commits
mosaicforecast		mosaicforecast
ASC_data_formatting.R		ASC_data_formatting.R
README.md		README.md
Structs.wdl		Structs.wdl
annotate_vcf.wdl		annotate_vcf.wdl
annotate_vcf_inputs.json		annotate_vcf_inputs.json
combine_RM.R		combine_RM.R
concat_sites.wdl		concat_sites.wdl
concat_sites_input.json		concat_sites_input.json
config.json		config.json
dependencies.zip		dependencies.zip
example_PON_selection.R		example_PON_selection.R
exclude_sites.wdl		exclude_sites.wdl
get_af_files.wdl		get_af_files.wdl
get_af_files_input.json		get_af_files_input.json
get_rm.wdl		get_rm.wdl
get_rm_inputs.json		get_rm_inputs.json
get_sites.wdl		get_sites.wdl
get_sites_inputs.json		get_sites_inputs.json
index_vcf.wdl		index_vcf.wdl
merge_annotate_vcfs.py		merge_annotate_vcfs.py
mutect_qc.wdl		mutect_qc.wdl
mutect_qc_filter.wdl		mutect_qc_filter.wdl
subset_vcf.wdl		subset_vcf.wdl
subset_vcf_inputs.json		subset_vcf_inputs.json
zip_vcf.wdl		zip_vcf.wdl
zip_vcf_inputs.json		zip_vcf_inputs.json

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