fixed barcode tag argument

ewowiredu · Sep 30, 2021 · 6cd5525 · 6cd5525
1 parent 1bdb2b0
commit 6cd5525
Showing 1 changed file with 4 additions and 4 deletions.
diff --git a/telescope/telescope_assign.py b/telescope/telescope_assign.py
@@ -212,6 +212,10 @@ class scIDOptions(IDOptions):
         - gtffile:
             positional: True
             help: Path to annotation file (GTF format)
+        - barcode_tag:
+            type: str
+            default: CB
+            help: Name of the field in the BAM/SAM file containing the barcode for each read.
         - attribute:
             default: locus
             help: GTF attribute that defines a transposable element locus. GTF
@@ -319,10 +323,6 @@ class scIDOptions(IDOptions):
                   If None, for each feature in the annotation, returns counts for the positive strand and negative strand. 
                   If not None, specifies the orientation of paired end reads (RF - read 1 reverse strand, read 2 forward strand) and
                   single end reads (F - forward strand). 
-        - barcode_tag:
-            type: str
-            default: CB
-            help: Name of the field in the BAM/SAM file containing the barcode for each read.
     - Model Parameters:
         - pi_prior:
             type: int