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Commits on Feb 22, 2023

• removing references to sc in README

  mlbendall

  committed
  4cf1859

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• fixed numpy.int error

  mlbendall

  committed
  5d0325c

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• installed versioneer for version tracking

  mlbendall

  committed
  51e433d

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• removed bulk/sc subcommand

  mlbendall

  committed
  3131e78

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• documentation

  mlbendall

  committed
  1a37165

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Commits on Sep 30, 2021

• fixed barcode tag argument

  mgreenig

  committed
  6cd5525

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• update readme

  mgreenig

  committed
  1bdb2b0

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• update readme

  mgreenig

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  e25c280

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• changed section title in readme

  mgreenig

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  7fe7a85

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• update readme

  mgreenig

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  aea9844

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• update readme

  mgreenig

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  0d1378f

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• Merge pull request mlbendall#25 from mlbendall/single_cell

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  mgreenig

  authored
  b6b0f13

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Commits on Sep 29, 2021

• changed default argument values

  mgreenig

  committed
  4dc2ffb

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• added argument for whether to use every reassignment mode

  mgreenig

  committed
  a53d155

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• fixed output file name for count matrix

  mgreenig

  committed
  8728362

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• fixed count matrix output filename

  mgreenig

  committed
  475c452

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• fixed count matrix output filename

  mgreenig

  committed
  7b4d9c0

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• fixed sparse matrix type

  mgreenig

  committed
  25d0460

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• accounting for reads that do not map

  mgreenig

  committed
  35cab39

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• accounting for reads that do not map

  mgreenig

  committed
  1992f7a

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• fixed barcode indices

  mgreenig

  committed
  96c64cf

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• added outfile path for counts

  mgreenig

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  6da573c

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• added barcode tag to arguments

  mgreenig

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  35efb07

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• removed unnecessary class variable

  mgreenig

  committed
  0779208

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• fixed class names

  mgreenig

  committed
  5382db1

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• fixed options for single/bulk sequencing

  mgreenig

  committed
  bbc6984

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• changed class method to instance method

  mgreenig

  committed
  3295e8c

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• Update readme

  mgreenig

  committed
  7dee587

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• Update readme

  mgreenig

  committed
  061114f

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• first upload of single-cell version

  mgreenig

  committed
  9a0b280

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Commits on Sep 28, 2021

• fixed logic in determining fragment strands

  mgreenig

  committed
  26a6c38

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• added support for unpaired reads in paired end seq

  mgreenig

  committed
  37c1b56

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• Merge pull request mlbendall#24 from mlbendall/stranded_mode

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  mgreenig

  authored
  703b714

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• Updated readme

  mgreenig

  committed
  5693589

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• added strand info for merged exons

  mgreenig

  committed
  350f6a7

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