Convert Seurat objects to 10x Genomics Loupe files.

An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)

Quantifying metabolism activity at the single-cell resolution

Clustering scRNAseq by genotypes

Quantification of transposable element expression using RNA-seq

Coarse-graining of large single-cell RNA-seq data into metacells

EB1A Full Application - I-140 and I-485

Tri-modal single cell profiling reveals a novel pediatric CD8aa T cell subset and broad age-related molecular reprogramming across the T cell compartment.

MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.

MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell transcriptomics data

Post-analysis of immune repertoire sequencing data

An implement R package to visualize GSEA results

Convert 10x BAM files to the original FASTQs compatible with 10x pipelines

R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data

Methods for detecting doublets in single-cell sequencing data

A tool for semi-automatic cell type classification, harmonization and integration

This is the code that was used to analyze the single cell sequencing data for the project "Fate and plasticity of SARS-CoV-2-specific B cells during memory and recall in humans"

Metacell - Single-cell mRNA Analysis

An experimental open-source attempt to make GPT-4 fully autonomous.

R package to do the Ligand Receptor Analysis Visualization

dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data

scripts and notebooks from sanbomics

VDJ Clonotyping & Analysis Tools

R package for the analysis of single-cell immune repertoires