Bioinformatician @metagenlab
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CHUV Institute of Microbiology
- Lausanne
- https://www.chuv.ch/en/microbiologie/imu-home/diagnostics/genomics-and-metagenomics
- https://orcid.org/0009-0007-9322-1281
- in/farchaab
Highlights
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benchmark-MeSS-CAMISIM Public
Forked from metagenlab/benchmark-MeSS-CAMISIMNextflow pipeline to benchmark two shotgun metagenomic communities simulators
Nextflow MIT License UpdatedOct 3, 2024 -
wobbler Public
Tool to get degenerate sites from primer alignments
Python MIT License UpdatedSep 12, 2024 -
bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
Shell MIT License UpdatedSep 12, 2024 -
diag_pipelines Public
Forked from metagenlab/diag_pipelinesPipelines dealing with high throughput sequencing data for microbiology diagnostic procedures. Documentation available at http://metagenlabdiag-pipelines.readthedocs.io/en/latest/ and Docker images…
Python UpdatedMay 28, 2024 -
ampliseq Public
Forked from nf-core/ampliseqAmplicon sequencing analysis workflow using DADA2 and QIIME2
Nextflow MIT License UpdatedApr 26, 2024 -
MultiQC Public
Forked from MultiQC/MultiQCAggregate results from bioinformatics analyses across many samples into a single report.
Python GNU General Public License v3.0 UpdatedNov 21, 2023 -
staged-recipes Public
Forked from conda-forge/staged-recipesA place to submit conda recipes before they become fully fledged conda-forge feedstocks
Python BSD 3-Clause "New" or "Revised" License UpdatedOct 24, 2023 -