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  • CAS-MPG Partner Institute for Computational Biology
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AlphaFold 3 inference pipeline.

Python 5,986 723 Updated Feb 6, 2025

Learning Large Language Model (LLM)(大语言模型学习)

Python 487 55 Updated Mar 31, 2024

The resources of LucaOne, including: the model code, training scripts, embedding inference code, and trained checkpoints.

Python 187 23 Updated Jan 18, 2025

Single-cell Graph Cuts Optimization

Jupyter Notebook 1 Updated Apr 27, 2024
Jupyter Notebook 17 6 Updated Oct 14, 2024

深度学习经典、新论文逐段精读

28,039 2,495 Updated Nov 17, 2024

🧑‍🏫 60+ Implementations/tutorials of deep learning papers with side-by-side notes 📝; including transformers (original, xl, switch, feedback, vit, ...), optimizers (adam, adabelief, sophia, ...), ga…

Python 58,420 5,949 Updated Aug 24, 2024

Transfer learning / domain adaptation / domain generalization / multi-task learning etc. Papers, codes, datasets, applications, tutorials.-迁移学习

Python 13,682 3,828 Updated Jan 18, 2025

Bio-Computing Platform Featuring Large-Scale Representation Learning and Multi-Task Deep Learning “螺旋桨”生物计算工具集

Python 1,038 228 Updated Nov 15, 2024

Single-cell Graph Cuts Optimization

Jupyter Notebook 16 4 Updated Apr 27, 2024

links to conference publications in graph-based deep learning

Jupyter Notebook 4,870 780 Updated Dec 12, 2024

DANCE: a deep learning library and benchmark platform for single-cell analysis

Python 355 36 Updated Feb 6, 2025

conST: an interpretable multi-modal contrastive learning framework for spatial transcriptomics

Python 26 4 Updated Feb 16, 2024
R 6 3 Updated Jul 12, 2022

Must-read papers on graph neural networks (GNN)

16,213 3,006 Updated Dec 20, 2023

Precision Medicine Knowledge Graph (PrimeKG)

Jupyter Notebook 476 103 Updated May 27, 2024

Programming assignments and quizzes from all courses within the GANs specialization offered by deeplearning.ai

Jupyter Notebook 456 316 Updated Jul 1, 2021

Interactive deep learning book with multi-framework code, math, and discussions. Adopted at 500 universities from 70 countries including Stanford, MIT, Harvard, and Cambridge.

Python 24,854 4,478 Updated Aug 18, 2024

cs224w(图机器学习)2021冬季课程的colab

Jupyter Notebook 236 38 Updated Jul 9, 2021

General notes and resources on how to analyze Spatial Transcriptomics data

HTML 12 4 Updated Jun 20, 2023

Algorithm for finding gene spatial pattern based on Gaussian process accelerated by SOM

Jupyter Notebook 6 5 Updated Oct 15, 2021

Notes, programming assignments and quizzes from all courses within the Coursera Deep Learning specialization offered by deeplearning.ai: (i) Neural Networks and Deep Learning; (ii) Improving Deep N…

Jupyter Notebook 3,458 2,402 Updated Dec 30, 2024

Open source code for AlphaFold 2.

Python 13,141 2,321 Updated Jan 29, 2025

Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection

R 40 15 Updated Dec 21, 2021

Single Cell Analysis Operations

R 13 23 Updated Mar 19, 2024

Scripts for analysis described in the article "Decoupling epithelial-mesenchymal transitions from stromal profiles by integrative expression analysis".

R 8 2 Updated Feb 20, 2021
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