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Commits on Jul 11, 2022

• Bump pipeline version to 2.5

  drpatelh

  committed
  ab88946

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Commits on May 17, 2022

• Fix merge conflicts

  drpatelh

  committed
  483f115

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Commits on May 16, 2022

• Template update for nf-core/tools version 2.4

  nf-core-bot

  committed
  eba9969

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Commits on Mar 15, 2022

• Template update for nf-core/tools version 2.3

  nf-core-bot

  committed
  98aba35

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Commits on Mar 4, 2022

• Bump pipeline version to 2.5dev

  drpatelh

  committed
  aea5c83

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Commits on Mar 1, 2022

• Update nextflow_schema.json to accept non-integer value for --primer_set_version (example, 4.1 for ARTIC v4.1)

  

  Stevin Wilson

  committed
  2d9f115

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Commits on Feb 21, 2022

• Update nextflow.config

  drpatelh

  authored
  303cca5

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Commits on Feb 18, 2022

• Make --outdir mandatory nf-core/tools#1415

  drpatelh

  committed
  70d0c0b

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• Add --publish_dir_mode back into pipeline template

  drpatelh

  committed
  b921321

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• Add fai index for ivar/variants

  drpatelh

  committed
  ed41114

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Commits on Feb 15, 2022

• Bump pipeline version to 2.4dev

  drpatelh

  committed
  5651b7f

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• Run nf-core sync with dev version of tools

  drpatelh

  committed
  d401356

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• Template update for nf-core/tools version 2.3.dev0

  drpatelh

  committed
  64db1c1

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• Bump pipeline version to 2.3.1

  drpatelh

  committed
  b683188

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Commits on Feb 4, 2022

• Bump versions to 2.4dev

  drpatelh

  committed
  100b527

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Commits on Feb 2, 2022

• Bump pipeline version to 2.3

  drpatelh

  committed
  a0f5bef

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• Dont create long table if using --skip_snpeff

  drpatelh

  committed
  b8480eb

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Commits on Feb 1, 2022

• First pass updates for PR nf-core#266

  drpatelh

  committed
  4269a2f

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Commits on Jan 28, 2022

• add param in nextflowconfig

  saramonzon

  committed
  0dd18db

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Commits on Jan 25, 2022

• Add implementation for --variant_caller and --consensus_caller everywhere

  drpatelh

  committed
  765dda5

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• Add --variant_caller and --consensus_caller params

  drpatelh

  committed
  bbe4c29

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Commits on Jan 24, 2022

• Add new params

  drpatelh

  committed
  6179db0

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Commits on Jan 13, 2022

• Fix tyop

  drpatelh

  committed
  94fc285

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• Add logic for --skip_consensus too

  drpatelh

  committed
  2446c45

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Commits on Jan 1, 2022

• Fix merge conflicts

  drpatelh

  committed
  cc6f8d2

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Commits on Dec 14, 2021

• Template update for nf-core/tools version 2.2

  nf-core-bot

  committed
  16975ab

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Commits on Jul 29, 2021

• Bump versions to 2.3dev

  drpatelh

  committed
  5d9b587

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Commits on Jul 27, 2021

• Template update for nf-core/tools version 2.1

  nf-core-bot

  committed
  c25b4d1

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Commits on Jul 20, 2021

• Bump version to v2.2

  drpatelh

  committed
  793a0c7

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Commits on Jul 13, 2021

• Template update for nf-core/tools version 2.0

  KevinMenden

  committed
  b1b9fb9

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Commits on Jun 15, 2021

• Bump version to 2.2dev

  drpatelh

  committed
  0118b1c

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Commits on Jun 9, 2021

• Bump pipeline version to 2.1

  drpatelh

  committed
  80f408d

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• Remove SRA download specific parameters

  drpatelh

  committed
  70095e4

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Commits on May 13, 2021

• Update CHANGELOG

  drpatelh

  committed
  d1c468c

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Commits on May 11, 2021

• Change Groovy comments everywhere

  drpatelh

  committed
  1ceb722

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