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  • miloR Public

    Forked from MarioniLab/miloR

    R package implementation of Milo for testing for differential abundance in KNN graphs

    HTML GNU General Public License v3.0 Updated Mar 7, 2024

  • vireo Public

    Forked from single-cell-genetics/vireo

    Demultiplexing pooled scRNA-seq data with or without genotype reference

    Python Apache License 2.0 Updated Mar 6, 2024

  • CellChat Public

    Forked from sqjin/CellChat

    R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data

    R GNU General Public License v3.0 Updated Jun 20, 2023

  • tradeSeq Public

    Forked from statOmics/tradeSeq

    TRAjectory-based Differential Expression analysis for SEQuencing data

    HTML Other Updated Mar 30, 2023

  • scvi-tools Public

    Forked from scverse/scvi-tools

    Deep probabilistic analysis of single-cell omics data

    Python BSD 3-Clause "New" or "Revised" License Updated Feb 16, 2022