code for MICCAI 2019 paper 'Uncertainty-aware Self-ensembling Model for Semi-supervised 3D Left Atrium Segmentation'.

Official PyTorch implementation for Co-Manifold Learning for Semi-supervised Medical Image Segmentation

Code accompanying the paper 'Coronary Artery Centerline Extraction in Cardiac CT Angiography Using a CNN-Based Orientation Classifier' (Medical Image Analysis)

A trainable PyTorch reproduction of AlphaFold 3.

Toolbox for Differential Geometry on Triangle and Tetrahedra Meshes (FEM, Laplace, Poisson, Heat Flow ...)

[MedIA 2023/MICCAI 2022 Grand Challenge]: Airway Tree Modeling (ATM'22) Related Work Collections, also includes the state-of-the-art works on pulmonary airway segmentation and related works.

A utility tool to download zenodo records (supports access token downloads)

JSeg is a Semantic segmentation toolbox based on MMSegmentation and Jittor

This repo is the official implementation of "Multimodal Multitask Deep Learning for Predicting Tertiary Lymphoid Structures and Peritoneal Recurrence in Gastric Cancer: A Multicenter Study"

Large-Scale Multi-Center CT and MRI Segmentation of Pancreas with Deep Learning

3DSlicer plugin for inpainting lung nodules in 3D chest CT data.

The official code for "SegVol: Universal and Interactive Volumetric Medical Image Segmentation".

RadImageNet, a pre-trained convolutional neural networks trained solely from medical imaging to be used as the basis of transfer learning for medical imaging applications.

Processing Library and Analysis Toolkit for Medical Imaging in Python

Data preprocessing for CCTA

TubeTK is an open-source toolkit for the segmentation, registration, and analysis of tubes and surfaces in images, developed by Kitware, Inc.

Code for general location finding in 3D CT scans

MIST: A simple and scalable end-to-end framework for 3D medical imaging segmentation.

CT Anatomical Region Recognition

Self-supervised pretraining for cardiovascular magnetic resonance cine segmentation

Convert NIfTI volume to triangulated mesh using marching cubes

A python module for scientific analysis of 3D data based on VTK and Numpy

The official Open-Asset-Importer-Library Repository. Loads 40+ 3D-file-formats into one unified and clean data structure.

CUDA Voxelizer to convert polygon meshes into annotated voxel grids

Extraction of 3D skeletons from meshes.