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  • ascairn Public

    Centromere sequence analysis using rare k-mer markers

    Python GNU General Public License v3.0 Updated Dec 18, 2024
  • Resource repository for ascairn package

    GNU General Public License v3.0 Updated Dec 18, 2024
  • nanomonsv Public

    SV detection tool for nanopore sequence reads

    Python 89 12 GNU General Public License v3.0 Updated Sep 5, 2024
  • My website

    HTML MIT License Updated Feb 29, 2024
  • ggseqlogo Public

    A lightweight package for generating sequence logos based on ggplot2

    R 1 Updated Jul 15, 2023
  • Test repository for workflow test

    Updated Jun 12, 2023
  • UXM_deconv Public

    Forked from nloyfer/UXM_deconv
    Python Other Updated Jan 4, 2023
  • iravnet Public

    intron retention associated variant detection project

    Python 8 1 GNU General Public License v3.0 Updated Nov 23, 2022
  • SAVNet Public

    detection of mutations causing splicing change

    Python 13 4 GNU General Public License v3.0 Updated Oct 6, 2022
  • homocomp Public

    homopolymer compression program by Rust

    Rust Apache License 2.0 Updated Sep 7, 2022
  • utility for comparing fusion results

    Python 3 4 Updated Aug 29, 2022
  • hap_utils Public

    Utilities for haplotype analysis

    Rust 1 Apache License 2.0 Updated Aug 29, 2022
  • onebreak Public

    national cancer center break point

    Python 2 Updated May 26, 2021
  • junc_utils Public

    utility functions for analyzing splicing junction

    Python GNU General Public License v3.0 Updated Apr 23, 2021
  • centr_utils Public

    utilities for centromere analysis

    Python 1 Updated Feb 23, 2021
  • Test script for Nanopore sequence local polishing

    Updated Dec 31, 2020
  • A python package from Pacific Biosciences to analyze centromeric sequences

    Python Updated Sep 16, 2020
  • Updated Sep 12, 2020
  • alu_proj Public

    Python Updated Jul 3, 2020
  • nanobreak Public

    Break point detection from nanopore sequencing data

    Python Updated May 31, 2020
  • sv_utils Public

    package for analyzing GenomonSV results

    Python 3 1 GNU General Public License v3.0 Updated Dec 11, 2019
  • simple_exp Public

    simple script for calculating gene expression

    Python Updated Oct 5, 2019
  • script for extracting intron retention events

    Python 7 GNU General Public License v3.0 Updated Sep 25, 2019
  • annot_utils Public

    scripts processing annotation data from UCSC

    Python 3 3 GNU General Public License v3.0 Updated Sep 25, 2019
  • Database for known cancer genes

    Python 1 Updated Sep 15, 2019
  • nonB_DB Public

    Database for nonB database

    Shell Updated Sep 15, 2019
  • fusion_db Public

    Database for fusion gene

    Python 3 1 Updated Sep 15, 2019
  • pmsignature Public

    R package for extracting mutation signatures from a list of somatic mutations

    R 37 15 Updated Aug 9, 2019
  • programs for processing chimeric reads generated at a STAR alignment step

    Python GNU General Public License v3.0 Updated May 18, 2019