Changed keeping chr in chrname

fritzsedlazeck · Feb 22, 2018 · 66371ae · 66371ae
1 parent c6027e1
commit 66371ae
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/src/vcfs/Merge_VCF.cpp b/src/vcfs/Merge_VCF.cpp
@@ -448,14 +448,14 @@ strvcfentry parse_vcf_entry(std::string buffer) {
 			tmp.sv_len = abs(tmp.start.pos - tmp.stop.pos);
 		}
 		if ((strcmp(tmp.start.chr.c_str(), tmp.stop.chr.c_str()) != 0)) { // || tmp.type==4
-			std::size_t found = tmp.stop.chr.find("chr");
+			/*std::size_t found = tmp.stop.chr.find("chr");
 			if (found != std::string::npos) {
 				tmp.stop.chr.erase(tmp.stop.chr.begin() + found, tmp.stop.chr.begin() + found + 3);
 			}
 			found = tmp.start.chr.find("chr");
 			if (found != std::string::npos) {
 				tmp.start.chr.erase(tmp.start.chr.begin() + found, tmp.start.chr.begin() + found + 3);
-			}
+			}*/
 
 			if (tmp.type == 5) { //BND
 				if (strcmp(tmp.stop.chr.c_str(), tmp.start.chr.c_str()) == 0) {