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Issues list

Add consensus sequence for all SV types. enhancement
#316 opened May 3, 2022 by fritzsedlazeck
BND records in VCF can't be mated
#333 opened Jun 30, 2022 by maxineliu
Phasing output issue while using --phase bug
#348 opened Aug 11, 2022 by jiadong324
Two deletions in same region enhancement
#364 opened Oct 26, 2022 by Akazhiel
VCF output insertions alternative alleles incorrect
#402 opened Jun 2, 2023 by dennishendriksen
Typo in calculating mean_svlen for merging of clusters enhancement
#407 opened Jun 16, 2023 by HillJamie
Hard clipping is not fully supported
#409 opened Jun 22, 2023 by HillJamie
BND alt alleles are incorrect - and an attached fix
#413 opened Jul 7, 2023 by HillJamie
output vcf DR correspond to the number of alignments not the read numbers
#418 opened Aug 11, 2023 by ErminZ
Why are BNDs filtered differently in primary and supplementary alignments?
#426 opened Sep 6, 2023 by HillJamie
@hermannromanek
--sample-id does not work in force calling mode
#427 opened Sep 6, 2023 by biorococo
Incomplete RNAMES? bug
#437 opened Oct 26, 2023 by weishwu
Detection of Reciprocal BNDs
#486 opened Jun 11, 2024 by Carly-KT
Type of BND connection mislabeled enhancement
#510 opened Sep 20, 2024 by ryan-moreno
@lfpaulin
bug: BND evidence from supplementary alignements discarded (sometimes)
#513 opened Oct 23, 2024 by yfarjoun
Ref base always 'N', despite providing --reference FASTA
#531 opened Nov 20, 2024 by bbimber
Most of the SVs has "SUPPORT=2". Should I merge some SVs?
#535 opened Dec 17, 2024 by SenLiBio
Sniffles segfaults when output directory doesn't exist bug
#326 opened Jun 9, 2022 by ASLeonard
@hermannromanek
1
"--output-rnames" parameter in force calling bug enhancement
#354 opened Sep 9, 2022 by Meltpinkg 2.6
@hermannromanek
1
Allele depth change on force-calling bug
#386 opened Mar 23, 2023 by Akazhiel
1
Malformed VCF output due to R nucleotide in reference
#401 opened Jun 1, 2023 by dennishendriksen
@hermannromanek
1
Possible bug: first cluster can only be merged once
#406 opened Jun 16, 2023 by HillJamie
@hermannromanek
1
Multisample Calling with BND (translocation) variants
#412 opened Jul 5, 2023 by tbenavi1
1
Population /Trio merging snf file - SUPP_VEC=only zeroes
#436 opened Oct 23, 2023 by sofiabanu
@hermannromanek
1
How to make sniffles do a better job in splitting insertions at the same location into two het calls?
#460 opened Mar 6, 2024 by ymcki
1
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