cbioportal-docker

A standalone Docker cantainer running the cBioPortal for Cancer Genomics (http://www.cbioportal.org/).

Summary

The image based on mysql:5 and tomcat:9-jre11 with using docker-composer. the MySQL data is stored on Docker volume on local host so the data is not removed when the Docker container is stopped. Also support 'session' service for group comparison (from cbioportal v3.0.0).

Requirement

• Git
• Docker (1.13.0+)
• docker-compose (Compose file is described with 3.0)

Install

% git clone https://github.com/fukuda-s/cbioportal-docker
% cd cbioportal-docker
% git clone https://github.com/cBioPortal/session-service

Run

% docker-compose up

Stop

% docker-compose down

Test

URL: http://localhost/cbioportal/