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cluster: Update Donovan's paper ref.
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wwood committed Jul 31, 2020
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2 changes: 1 addition & 1 deletion src/cluster_argument_parsing.rs
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Expand Up @@ -621,7 +621,7 @@ pub fn add_cluster_subcommand<'a>(app: clap::App<'a, 'a>) -> clap::App<'a, 'a> {
.help("Scoring function for genome quality. \
'Parks2020_reduced' for 'completeness-5*contamination-5*num_contigs/100-5*num_ambiguous_bases/100000' \
which is reduced from a quality formula described in Parks et. al. 2020\
https://www.biorxiv.org/content/10.1101/771964v2.abstract\
https://www.nature.com/articles/s41587-020-0501-8\
'completeness-4contamination' for 'completeness-4*contamination', \
'completeness-5contamination' for 'completeness-5*contamination', \
'dRep' for 'completeness-5*contamination+contamination*(strain_heterogeneity/100)+0.5*log10(N50)'")
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