Tutorial on large language models for genomics

Turn your data frame into a tableau style drag and drop UI interface to build visualization in R.

🙌 OpenHands: Code Less, Make More

Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!

customizable pipeline to identify viral sequences from (meta)genomic data

A growing collection of bioinformatics tutorials, project guides, tools, and articles I’ve developed to make bioinformatics more accessible.

User-friendly AI Interface (Supports Ollama, OpenAI API, ...)

A fast, local neural text to speech system

Get your documents ready for gen AI

Ultra-fast and memory-efficient (meta-)genome assembler

VirID: An integrated platform for the discovery and characterization of RNA Viruses

geNomad: Identification of mobile genetic elements

PyGWalker: Turn your pandas dataframe into an interactive UI for visual analysis

A repository that holds a simple guide on how you can install and configure proprietary NVIDIA drivers for Arch Linux.

Bioconductor teaching and education committee

Generate images of code and terminal output 📸

Next version of roadmap.sh

The best Openbox themes selected by me

🔮 Full RStudio IDE and Syntax Themes

Accurate sample inference from amplicon data with single nucleotide resolution

A pipeline used to identify different modes of duplicated gene pairs

An R package to infer and analyze synteny networks from protein sequences

a tool to predict highly similar duplicates (HSDs) in eukaryotes

Python library to facilitate genome assembly, annotation, and comparative genomics

Density-preserving data visualization tools den-SNE and densMAP

With RNArtist, you construct a collection of RNA structures that can be gathered into RNA families, projects,...

Prodigal Gene Prediction Software

Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightweight and easy to use.